Variant report

Variant	rs17171809
Chromosome Location	chr7:41100235-41100236
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs17171810	1.00[AMR][1000 genomes]
rs41331051	0.97[AFR][1000 genomes]
rs61551738	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61597427	0.89[AFR][1000 genomes]
rs6947651	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73319572	0.84[AFR][1000 genomes]
rs73319577	0.97[AFR][1000 genomes]
rs73319584	0.97[AFR][1000 genomes]
rs73319586	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034605	chr7:41096638-41222426	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:41095600-41100600	Weak transcription	HSMM	muscle
2	chr7:41098400-41100400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr7:41098600-41104600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr7:41099200-41104800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr7:41099400-41100400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr7:41099600-41104800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr7:41099800-41100800	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr7:41100000-41100600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr7:41100000-41101000	Strong transcription	Aorta	Aorta
10	chr7:41100000-41104600	Weak transcription	HMEC	breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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