Variant report

Variant	rs17175458
Chromosome Location	chr14:70557927-70557928
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12879523	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1544870	0.84[CEU][hapmap];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17107695	0.88[MEX][hapmap];0.80[TSI][hapmap]
rs17107753	0.91[ASW][hapmap];0.84[CEU][hapmap];0.94[MEX][hapmap];0.82[TSI][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17107766	0.91[ASW][hapmap];0.84[CEU][hapmap];0.86[LWK][hapmap];0.94[MEX][hapmap];0.89[MKK][hapmap];0.82[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17107771	0.84[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2877613	0.83[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3850425	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3861683	0.84[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs58640876	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61290566	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs67484752	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs67588351	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs67611989	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs67632716	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7150636	0.88[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs7151975	0.91[ASW][hapmap];0.84[CEU][hapmap];0.95[LWK][hapmap];0.94[MEX][hapmap];0.94[MKK][hapmap];0.82[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs8006821	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs8020841	0.83[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456336	chr14:70081956-70574149	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv565007	chr14:70081956-70574149	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70549600-70564400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr14:70554200-70563000	Weak transcription	Psoas Muscle	Psoas
3	chr14:70554400-70564400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr14:70554600-70560000	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr14:70556200-70560000	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr14:70557200-70561400	Weak transcription	Brain Angular Gyrus	brain
7	chr14:70557200-70565200	Weak transcription	Brain Inferior Temporal Lobe	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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