Variant report

Variant	rs17177087
Chromosome Location	chr12:4880880-4880881
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12426039	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17783475	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17783715	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054218	chr12:4819576-4882667	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:4869800-4884200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr12:4873200-4881800	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr12:4873200-4889800	Weak transcription	Stomach Smooth Muscle	stomach
4	chr12:4873400-4881200	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr12:4873400-4889400	Weak transcription	Ovary	ovary
6	chr12:4874600-4881000	Weak transcription	Fetal Brain Female	brain
7	chr12:4875600-4881400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr12:4876600-4881400	Weak transcription	Brain Germinal Matrix	brain
9	chr12:4877000-4885800	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr12:4878200-4885000	Weak transcription	Brain Cingulate Gyrus	brain
11	chr12:4878600-4881600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr12:4880000-4881600	Enhancers	Left Ventricle	heart
13	chr12:4880200-4881400	Enhancers	Spleen	Spleen
14	chr12:4880200-4881600	Enhancers	Right Atrium	heart
15	chr12:4880400-4881600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr12:4880400-4881600	Enhancers	Right Ventricle	heart
17	chr12:4880600-4881000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr12:4880600-4884200	Weak transcription	Lung	lung
19	chr12:4880800-4881000	Enhancers	Fetal Heart	heart
20	chr12:4880800-4882000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr12:4880800-4884400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr12:4880800-4884800	Weak transcription	Brain Anterior Caudate	brain

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