Variant report

Variant	rs17179470
Chromosome Location	chr14:72552752-72552753
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs72719809	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72719810	0.80[EUR][1000 genomes]
rs72719822	0.82[EUR][1000 genomes]
rs72719824	0.82[EUR][1000 genomes]
rs72719825	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv948800	chr14:72462557-73150701	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72542600-72553400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr14:72542800-72554800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr14:72550400-72552800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr14:72551000-72560800	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr14:72551600-72552800	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr14:72552600-72553000	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr14:72552600-72553600	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr14:72552600-72553600	Enhancers	iPS-18 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links