Variant report

Variant	rs17181032
Chromosome Location	chr9:79332012-79332013
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10512059	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10512060	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap]
rs12339310	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12346312	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs13440440	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17180718	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs17180920	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17180962	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17180997	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17181025	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17181081	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17786994	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17787036	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17787054	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17787066	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17787120	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17787401	0.89[EUR][1000 genomes]
rs28566501	0.93[ASN][1000 genomes]
rs56919429	0.80[ASN][1000 genomes]
rs58110854	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58239780	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60263333	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7029812	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs7868609	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs7871266	1.00[YRI][hapmap];1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869152	chr9:78742197-79583399	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv931033	chr9:78850330-79366454	Genic enhancers Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1040363	chr9:79246366-79711737	Weak transcription Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv893481	chr9:79304043-79348193	Enhancers Strong transcription Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	esv2754389	chr9:79318677-79333056	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:79300400-79332200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr9:79324000-79332200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr9:79327800-79341800	Weak transcription	Fetal Stomach	stomach
4	chr9:79328000-79341200	Weak transcription	Aorta	Aorta
5	chr9:79328600-79332600	Weak transcription	Fetal Muscle Leg	muscle
6	chr9:79329200-79333200	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr9:79330400-79333600	Enhancers	Rectal Smooth Muscle	rectum
8	chr9:79330400-79334000	Enhancers	Brain Hippocampus Middle	brain
9	chr9:79330800-79333400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr9:79330800-79333400	Enhancers	HUVEC	blood vessel
11	chr9:79331000-79332400	Enhancers	Fetal Intestine Small	intestine
12	chr9:79331000-79332600	Enhancers	Fetal Intestine Large	intestine
13	chr9:79331000-79333600	Enhancers	HSMMtube	muscle
14	chr9:79331000-79333800	Enhancers	Brain Cingulate Gyrus	brain
15	chr9:79331000-79334000	Enhancers	Brain Substantia Nigra	brain
16	chr9:79331200-79333000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr9:79331200-79333200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr9:79331200-79333200	Enhancers	Brain Anterior Caudate	brain
19	chr9:79331200-79333200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
20	chr9:79331200-79333200	Enhancers	NHDF-Ad	bronchial
21	chr9:79331200-79333600	Enhancers	Osteobl	bone
22	chr9:79331400-79333200	Enhancers	Brain Inferior Temporal Lobe	brain
23	chr9:79331600-79333200	Enhancers	HSMM	muscle
24	chr9:79331600-79333800	Enhancers	Colon Smooth Muscle	Colon
25	chr9:79331800-79332200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr9:79331800-79332400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr9:79331800-79333200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr9:79331800-79333400	Enhancers	Pancreatic Islets	Pancreatic Islet
29	chr9:79332000-79332200	Enhancers	ES-I3 Cell Line	embryonic stem cell
30	chr9:79332000-79332200	Enhancers	Sigmoid Colon	Sigmoid Colon
31	chr9:79332000-79332600	Enhancers	Duodenum Smooth Muscle	Duodenum
32	chr9:79332000-79332800	Enhancers	Primary monocytes fromperipheralblood	blood
33	chr9:79332000-79332800	Enhancers	Primary hematopoietic stem cells short term culture	blood
34	chr9:79332000-79333000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr9:79332000-79333000	Enhancers	Stomach Smooth Muscle	stomach
36	chr9:79332000-79333200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr9:79332000-79333200	Enhancers	Muscle Satellite Cultured Cells	--
38	chr9:79332000-79333200	Enhancers	Brain Angular Gyrus	brain
39	chr9:79332000-79333800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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