Variant report
| Variant | rs17181832 |
|---|---|
| Chromosome Location | chr14:42420968-42420969 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr14:42419264..42421094-chr14:42422661..42425428,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:7)
| rs_ID | r2[population] |
|---|---|
| rs1022857 | 0.82[AMR][1000 genomes] |
| rs1614577 | 0.81[AMR][1000 genomes] |
| rs17181811 | 0.86[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs1763274 | 0.81[AMR][1000 genomes] |
| rs17781510 | 0.82[AMR][1000 genomes] |
| rs2415693 | 0.81[AMR][1000 genomes] |
| rs2631319 | 0.88[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv901740 | chr14:42386859-42477256 | Enhancers Weak transcription Active TSS Flanking Active TSS | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs17181832 | FAM179B | cis | parietal | SCAN |
Chromatin state (count:0 , 50 per page) page:
| No data |
