Variant report

Variant	rs17182243
Chromosome Location	chr14:21325488-21325489
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:21307828..21309542-chr14:21323768..21326232,2	MCF-7	breast:
2	chr14:21314410..21316763-chr14:21323540..21325597,2	K562	blood:
3	chr14:21155907..21157723-chr14:21323708..21325549,2	MCF-7	breast:
4	chr14:21325086..21326530-chr14:21507784..21508853,5	MCF-7	breast:
5	chr14:21325127..21326043-chr14:21559445..21560171,2	MCF-7	breast:
6	chr14:21164738..21167054-chr14:21324271..21326741,2	MCF-7	breast:
7	chr14:21306953..21309140-chr14:21323464..21326358,2	K562	blood:

Variant related genes	Relation type
ENSG00000214274	Chromatin interaction
ENSG00000258818	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10139443	0.83[CEU][hapmap];0.91[JPT][hapmap]
rs10162308	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10872858	1.00[CEU][hapmap];0.91[JPT][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11156730	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11623919	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17254450	1.00[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.82[YRI][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17254457	1.00[CEU][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1889771	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1889772	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28398970	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61978607	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs68014001	0.82[ASN][1000 genomes]
rs8011501	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8014985	0.84[CEU][hapmap];0.82[CHB][hapmap];0.92[JPT][hapmap]
rs8016193	0.84[CEU][hapmap];0.82[CHB][hapmap];0.92[JPT][hapmap];0.80[ASN][1000 genomes]
rs983671	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043923	chr14:20338742-21336425	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	203 gene(s)	inside rSNPs	diseases
2	nsv541970	chr14:20338742-21336425	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	203 gene(s)	inside rSNPs	diseases
3	nsv1045505	chr14:21168839-21337972	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	esv2758349	chr14:21216108-21471614	Active TSS Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
5	esv2759972	chr14:21216108-21471614	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
6	nsv427936	chr14:21216108-21531783	Flanking Active TSS Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
7	nsv428293	chr14:21216108-21531783	Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:21317200-21325800	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr14:21317400-21326000	Weak transcription	Fetal Intestine Small	intestine
3	chr14:21317800-21325800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr14:21318000-21325600	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr14:21324000-21325600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr14:21324000-21325600	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr14:21324000-21325600	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr14:21324000-21325600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr14:21324000-21325600	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr14:21324000-21325600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr14:21324000-21325800	Weak transcription	Liver	Liver
12	chr14:21324000-21325800	Weak transcription	Brain Angular Gyrus	brain
13	chr14:21324000-21325800	Weak transcription	Brain Anterior Caudate	brain
14	chr14:21324000-21325800	Weak transcription	Brain Cingulate Gyrus	brain
15	chr14:21324000-21325800	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr14:21324000-21325800	Weak transcription	Brain Substantia Nigra	brain
17	chr14:21324000-21325800	Weak transcription	Fetal Intestine Large	intestine
18	chr14:21324000-21325800	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr14:21324000-21326000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr14:21324000-21326000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr14:21324400-21325600	Weak transcription	K562	blood
22	chr14:21324400-21325800	Weak transcription	Brain Hippocampus Middle	brain
23	chr14:21324400-21325800	Weak transcription	A549	lung
24	chr14:21324400-21326200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links