Variant report

Variant	rs17184043
Chromosome Location	chr3:68551172-68551173
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs13099682	1.00[YRI][hapmap];0.82[AMR][1000 genomes]
rs1398066	0.81[EUR][1000 genomes]
rs1511902	0.82[EUR][1000 genomes]
rs1511903	0.82[EUR][1000 genomes]
rs1511904	0.82[EUR][1000 genomes]
rs1606243	0.82[EUR][1000 genomes]
rs17241889	0.84[CEU][hapmap]
rs17243134	0.84[CEU][hapmap]
rs1849228	0.81[EUR][1000 genomes]
rs1849229	0.81[TSI][hapmap];0.81[EUR][1000 genomes]
rs1849230	0.81[EUR][1000 genomes]
rs1849235	0.82[CEU][hapmap]
rs1849236	0.82[EUR][1000 genomes]
rs2665536	0.82[EUR][1000 genomes]
rs2665537	0.82[EUR][1000 genomes]
rs2665538	0.82[EUR][1000 genomes]
rs2668161	0.82[EUR][1000 genomes]
rs2668162	0.82[EUR][1000 genomes]
rs2668168	0.80[EUR][1000 genomes]
rs2668170	0.82[EUR][1000 genomes]
rs7619368	0.84[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1832396	chr3:68478762-68641509	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv876928	chr3:68505398-68551172	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv876929	chr3:68508137-68565824	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17184043	SUCLG2	cis	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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