Variant report

Variant	rs17185151
Chromosome Location	chr14:25276191-25276192
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:25275176..25276196-chr14:25601801..25602663,4	MCF-7	breast:
2	chr14:25275544..25276429-chr14:25600109..25600712,2	MCF-7	breast:
3	chr14:25275252..25276232-chr14:25706794..25707562,4	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1241650	0.82[CHB][hapmap]
rs12586290	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17257382	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1958352	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2297060	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35990769	0.92[ASN][1000 genomes]
rs3759644	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs712492	0.82[CHB][hapmap]
rs854313	0.88[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs854315	0.88[CHB][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs854317	0.88[CHB][hapmap];0.93[JPT][hapmap];0.87[ASN][1000 genomes]
rs854318	0.87[CHB][hapmap];0.93[JPT][hapmap];0.86[ASN][1000 genomes]
rs854323	0.88[CHB][hapmap];0.93[JPT][hapmap];0.86[ASN][1000 genomes]
rs854324	0.88[CHB][hapmap];0.93[JPT][hapmap];0.86[ASN][1000 genomes]
rs854327	0.86[ASN][1000 genomes]
rs854328	0.88[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs861258	0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv901504	chr14:25184210-25646203	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv901505	chr14:25237268-25360584	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1035284	chr14:25267840-25285191	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
6	nsv542003	chr14:25267840-25285191	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
7	nsv525203	chr14:25270335-25282967	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
8	nsv456169	chr14:25270335-25288227	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
9	nsv564071	chr14:25270335-25288227	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:25272400-25283400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr14:25273200-25276800	Enhancers	Placenta Amnion	Placenta Amnion
3	chr14:25273400-25276200	Enhancers	Fetal Lung	lung
4	chr14:25273400-25276200	Enhancers	HepG2	liver
5	chr14:25273400-25277600	Enhancers	Fetal Intestine Small	intestine
6	chr14:25273400-25277600	Weak transcription	Pancreas	Pancrea
7	chr14:25273400-25278200	Enhancers	Fetal Intestine Large	intestine
8	chr14:25274000-25283000	Weak transcription	Gastric	stomach
9	chr14:25275000-25276600	Enhancers	Rectal Mucosa Donor 31	rectum
10	chr14:25275000-25279400	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr14:25275200-25276200	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr14:25275200-25276600	Enhancers	Fetal Heart	heart
13	chr14:25275200-25276600	Enhancers	Right Atrium	heart
14	chr14:25275200-25285000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr14:25275400-25276200	Enhancers	Adipose Nuclei	Adipose
16	chr14:25275400-25276200	Enhancers	Brain Anterior Caudate	brain
17	chr14:25275400-25276200	Enhancers	Colon Smooth Muscle	Colon
18	chr14:25275400-25276200	Enhancers	Stomach Smooth Muscle	stomach
19	chr14:25275400-25276600	Enhancers	Duodenum Mucosa	Duodenum
20	chr14:25275400-25276600	Enhancers	Left Ventricle	heart
21	chr14:25275400-25277200	Enhancers	Liver	Liver
22	chr14:25275400-25278200	Weak transcription	HSMMtube	muscle
23	chr14:25275400-25278400	Enhancers	Right Ventricle	heart
24	chr14:25275400-25285000	Weak transcription	Lung	lung
25	chr14:25275600-25279400	Weak transcription	Fetal Muscle Leg	muscle
26	chr14:25275600-25279600	Weak transcription	Brain Hippocampus Middle	brain
27	chr14:25275800-25276200	Enhancers	Pancreatic Islets	Pancreatic Islet
28	chr14:25275800-25279200	Weak transcription	Fetal Kidney	kidney
29	chr14:25276000-25276200	Enhancers	Fetal Brain Female	brain
30	chr14:25276000-25278200	Weak transcription	Stomach Mucosa	stomach
31	chr14:25276000-25279400	Weak transcription	Brain Substantia Nigra	brain
32	chr14:25276000-25279400	Weak transcription	Small Intestine	intestine
33	chr14:25276000-25280800	Weak transcription	HUES48 Cell Line	embryonic stem cell
34	chr14:25276000-25281400	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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