Variant report

Variant	rs17185849
Chromosome Location	chr4:171866908-171866909
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10011354	0.81[EUR][1000 genomes]
rs10012648	0.81[EUR][1000 genomes]
rs10428454	0.81[EUR][1000 genomes]
rs12331863	0.87[EUR][1000 genomes]
rs13136678	0.87[EUR][1000 genomes]
rs13138342	0.81[EUR][1000 genomes]
rs13141450	0.87[EUR][1000 genomes]
rs13151801	0.80[EUR][1000 genomes]
rs1368004	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1396325	0.81[EUR][1000 genomes]
rs1508515	0.81[EUR][1000 genomes]
rs1813084	0.86[EUR][1000 genomes]
rs2048199	0.81[EUR][1000 genomes]
rs2048201	0.80[EUR][1000 genomes]
rs2089549	0.87[EUR][1000 genomes]
rs2174943	0.81[EUR][1000 genomes]
rs25510	0.81[EUR][1000 genomes]
rs25511	0.81[EUR][1000 genomes]
rs25512	0.81[EUR][1000 genomes]
rs35171590	0.81[EUR][1000 genomes]
rs35941242	0.81[EUR][1000 genomes]
rs4692627	0.81[EUR][1000 genomes]
rs55919791	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56886621	0.80[EUR][1000 genomes]
rs61012267	0.80[EUR][1000 genomes]
rs61448487	0.80[EUR][1000 genomes]
rs62344476	0.81[EUR][1000 genomes]
rs62344478	0.81[EUR][1000 genomes]
rs6419980	0.80[EUR][1000 genomes]
rs6553554	0.81[EUR][1000 genomes]
rs6553556	0.81[EUR][1000 genomes]
rs6553557	0.81[EUR][1000 genomes]
rs6553558	0.81[EUR][1000 genomes]
rs66706620	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6811103	0.81[EUR][1000 genomes]
rs6811337	0.81[EUR][1000 genomes]
rs6812562	0.81[EUR][1000 genomes]
rs6817733	0.81[EUR][1000 genomes]
rs6818346	0.80[EUR][1000 genomes]
rs6819553	0.81[EUR][1000 genomes]
rs6827582	0.80[EUR][1000 genomes]
rs6849128	0.81[EUR][1000 genomes]
rs6853309	0.81[EUR][1000 genomes]
rs72704640	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72706514	0.81[EUR][1000 genomes]
rs7340816	0.80[EUR][1000 genomes]
rs7663696	0.81[EUR][1000 genomes]
rs7673070	0.81[EUR][1000 genomes]
rs9684382	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9968437	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881345	chr4:171673765-172228547	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1018793	chr4:171808272-172395180	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1024230	chr4:171830560-171915978	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv1021182	chr4:171830560-171924702	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv880853	chr4:171842726-171939724	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv881662	chr4:171842726-171957000	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:171866000-171867600	Enhancers	Breast Myoepithelial Primary Cells	Breast

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