Variant report

Variant	rs17186635
Chromosome Location	chr6:114200705-114200706
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:113809247..113809874-chr6:114200355..114201347,2	MCF-7	breast:
2	chr6:114200440..114202419-chr6:114202886..114205788,3	K562	blood:
3	chr6:114200223..114202562-chr6:114240736..114243361,2	K562	blood:
4	chr6:112658194..112658798-chr6:114200352..114201312,2	MCF-7	breast:
5	chr6:114200514..114201072-chr8:22022118..22022959,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000168487	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1581739	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs352083	1.00[CHB][hapmap]
rs59162537	1.00[ASN][1000 genomes]
rs6568815	1.00[ASN][1000 genomes]
rs6899377	1.00[ASN][1000 genomes]
rs6917027	1.00[ASN][1000 genomes]
rs751923	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021774	chr6:114063971-114407280	Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv538422	chr6:114063971-114407280	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	esv3363275	chr6:114101331-114302866	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114194400-114202000	Weak transcription	Ovary	ovary
2	chr6:114194600-114202000	Weak transcription	Lung	lung
3	chr6:114199400-114200800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr6:114199600-114200800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:114200000-114201000	Enhancers	Osteobl	bone
6	chr6:114200000-114203800	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr6:114200200-114200800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr6:114200200-114200800	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr6:114200200-114200800	Enhancers	HSMM	muscle
10	chr6:114200200-114201000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr6:114200200-114201000	Enhancers	Fetal Kidney	kidney
12	chr6:114200200-114201200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr6:114200400-114200800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr6:114200400-114200800	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr6:114200400-114200800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr6:114200400-114200800	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr6:114200400-114200800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr6:114200400-114200800	Enhancers	Muscle Satellite Cultured Cells	--
19	chr6:114200400-114200800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr6:114200400-114200800	Enhancers	Liver	Liver
21	chr6:114200400-114200800	Active TSS	Duodenum Mucosa	Duodenum
22	chr6:114200400-114200800	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
23	chr6:114200400-114200800	Active TSS	Pancreatic Islets	Pancreatic Islet
24	chr6:114200400-114200800	Active TSS	Rectal Mucosa Donor 29	rectum
25	chr6:114200400-114200800	Enhancers	HepG2	liver
26	chr6:114200400-114200800	Enhancers	NH-A	brain
27	chr6:114200400-114201000	Enhancers	Primary monocytes fromperipheralblood	blood
28	chr6:114200400-114201000	Enhancers	Fetal Lung	lung
29	chr6:114200400-114201200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr6:114200400-114201200	Enhancers	Adipose Nuclei	Adipose
31	chr6:114200600-114200800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr6:114200600-114200800	Active TSS	Brain Hippocampus Middle	brain
33	chr6:114200600-114200800	Active TSS	Fetal Intestine Large	intestine
34	chr6:114200600-114200800	Active TSS	Rectal Mucosa Donor 31	rectum
35	chr6:114200600-114200800	Active TSS	HUVEC	blood vessel
36	chr6:114200600-114200800	Enhancers	Monocytes-CD14+_RO01746	blood
37	chr6:114200600-114201000	Enhancers	Fetal Brain Female	brain
38	chr6:114200600-114201000	Enhancers	Fetal Stomach	stomach
39	chr6:114200600-114201200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr6:114200600-114202400	Weak transcription	Colon Smooth Muscle	Colon
41	chr6:114200600-114205200	Weak transcription	HSMMtube	muscle

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