Variant report

Variant	rs17189775
Chromosome Location	chr13:96157760-96157761
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17189768	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57425400	0.85[EUR][1000 genomes]
rs60690514	0.90[EUR][1000 genomes]
rs7333145	0.85[EUR][1000 genomes]
rs7337410	0.85[EUR][1000 genomes]
rs7983483	0.90[EUR][1000 genomes]
rs7985976	0.85[EUR][1000 genomes]
rs7994340	0.85[EUR][1000 genomes]
rs7998174	0.90[EUR][1000 genomes]
rs7999766	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752652	chr13:96059024-96181597	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv900933	chr13:96138087-96215289	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Weak transcription Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96150600-96157800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr13:96150600-96166800	Weak transcription	Pancreas	Pancrea
3	chr13:96150600-96167800	Weak transcription	Esophagus	oesophagus
4	chr13:96157000-96157800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
5	chr13:96157000-96157800	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr13:96157000-96158000	Enhancers	Fetal Heart	heart
7	chr13:96157000-96158800	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr13:96157000-96159200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr13:96157200-96158000	Enhancers	H1 Cell Line	embryonic stem cell
10	chr13:96157200-96158000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr13:96157200-96158000	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr13:96157200-96158000	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr13:96157200-96158000	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr13:96157200-96158000	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr13:96157200-96158000	Enhancers	A549	lung
16	chr13:96157200-96158400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr13:96157400-96157800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
18	chr13:96157400-96157800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr13:96157400-96158000	Enhancers	H9 Cell Line	embryonic stem cell
20	chr13:96157400-96158000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr13:96157400-96158000	Enhancers	HMEC	breast
22	chr13:96157400-96158000	Enhancers	NH-A	brain
23	chr13:96157600-96157800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr13:96157600-96157800	Enhancers	Brain Substantia Nigra	brain
25	chr13:96157600-96157800	Enhancers	Fetal Muscle Leg	muscle
26	chr13:96157600-96157800	Bivalent Enhancer	Osteobl	bone

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