Variant report

Variant	rs17196997
Chromosome Location	chr11:46449042-46449043
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:46448160..46450143-chr11:46548223..46551067,2	MCF-7	breast:
2	chr11:46443817..46445771-chr11:46447587..46449187,2	K562	blood:
3	chr11:46447241..46449691-chr11:46451827..46453438,2	K562	blood:
4	chr11:46440995..46443504-chr11:46446202..46449083,2	MCF-7	breast:
5	chr11:46441415..46443647-chr11:46446607..46450426,5	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs11038933	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv554202	chr11:46334239-46469900	Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1050614	chr11:46414720-46496732	Weak transcription Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv541029	chr11:46442658-46460232	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46417800-46463400	Weak transcription	Fetal Brain Male	brain
2	chr11:46426800-46468800	Weak transcription	Psoas Muscle	Psoas
3	chr11:46430200-46450600	Weak transcription	HUVEC	blood vessel
4	chr11:46430200-46456000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr11:46430600-46451600	Weak transcription	NHDF-Ad	bronchial
6	chr11:46430600-46455000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr11:46433200-46449200	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr11:46433600-46466400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr11:46436400-46450600	Weak transcription	Osteobl	bone
10	chr11:46436400-46454400	Weak transcription	A549	lung
11	chr11:46436600-46466400	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr11:46437000-46452000	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr11:46437200-46449200	Strong transcription	Primary T helper cells PMA-I stimulated	--
14	chr11:46437200-46452600	Weak transcription	HMEC	breast
15	chr11:46437400-46455000	Weak transcription	Stomach Mucosa	stomach
16	chr11:46437600-46452600	Weak transcription	NH-A	brain
17	chr11:46437800-46450600	Weak transcription	HSMM	muscle
18	chr11:46437800-46452400	Weak transcription	Fetal Kidney	kidney
19	chr11:46438000-46461400	Strong transcription	Primary T cells from cord blood	blood
20	chr11:46438400-46451800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr11:46438400-46454400	Weak transcription	Brain Angular Gyrus	brain
22	chr11:46438400-46457200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr11:46438400-46459600	Strong transcription	Dnd41	blood
24	chr11:46439000-46452200	Weak transcription	Rectal Smooth Muscle	rectum
25	chr11:46439000-46452800	Weak transcription	Fetal Brain Female	brain
26	chr11:46439600-46449800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
27	chr11:46439600-46450600	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr11:46439600-46450600	Weak transcription	Primary monocytes fromperipheralblood	blood
29	chr11:46439600-46452200	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr11:46439600-46454200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
31	chr11:46440400-46466200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr11:46440600-46452600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr11:46440800-46451200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr11:46443200-46449600	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr11:46443200-46450600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr11:46443200-46450800	Weak transcription	Colonic Mucosa	Colon
37	chr11:46443200-46452000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr11:46443200-46452200	Weak transcription	Gastric	stomach
39	chr11:46443200-46452800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
40	chr11:46443200-46453000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
41	chr11:46443200-46454800	Weak transcription	H9 Cell Line	embryonic stem cell
42	chr11:46443400-46454400	Weak transcription	Brain Germinal Matrix	brain
43	chr11:46443800-46449600	Weak transcription	Brain Anterior Caudate	brain
44	chr11:46443800-46450600	Weak transcription	NHEK	skin
45	chr11:46443800-46450800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr11:46443800-46451000	Weak transcription	Primary neutrophils fromperipheralblood	blood
47	chr11:46443800-46451600	Weak transcription	Pancreas	Pancrea
48	chr11:46443800-46452200	Weak transcription	Brain Hippocampus Middle	brain
49	chr11:46443800-46452400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr11:46443800-46452400	Weak transcription	Spleen	Spleen

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