Variant report

Variant	rs17197388
Chromosome Location	chr3:74874585-74874586
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs11970124	0.81[AFR][1000 genomes]
rs12527342	0.81[AFR][1000 genomes]
rs12660218	0.88[ASN][1000 genomes]
rs12663055	0.88[ASN][1000 genomes]
rs17190991	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17191040	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17197375	0.81[AFR][1000 genomes]
rs17197395	0.81[AFR][1000 genomes]
rs17197402	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28617578	0.81[AFR][1000 genomes]
rs3208498	0.81[AFR][1000 genomes]
rs4351302	0.88[ASN][1000 genomes]
rs4516988	0.88[ASN][1000 genomes]
rs4520044	0.83[ASN][1000 genomes]
rs4711258	0.81[AFR][1000 genomes]
rs4713440	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56178408	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60107636	0.81[AFR][1000 genomes]
rs60851386	0.81[AFR][1000 genomes]
rs6913631	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6913894	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9295965	0.88[ASN][1000 genomes]
rs9461652	0.81[AFR][1000 genomes]
rs9461653	0.81[AFR][1000 genomes]
rs9461657	0.81[AFR][1000 genomes]
rs9468881	0.83[AFR][1000 genomes]
rs9468883	0.81[AFR][1000 genomes]
rs9468884	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9468886	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9468887	0.81[AFR][1000 genomes]
rs9468889	0.81[AFR][1000 genomes]
rs9468890	0.81[AFR][1000 genomes]
rs9468896	0.84[ASN][1000 genomes]
rs9468897	0.88[ASN][1000 genomes]
rs9468899	0.88[ASN][1000 genomes]
rs9501070	0.81[AFR][1000 genomes]
rs9501071	0.81[AFR][1000 genomes]
rs9501072	0.81[AFR][1000 genomes]
rs9501079	0.81[ASN][1000 genomes]
rs9501082	0.88[ASN][1000 genomes]
rs9501350	0.85[AFR][1000 genomes]
rs9501351	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9501506	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9501507	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9501508	0.81[AFR][1000 genomes]
rs9501513	0.88[ASN][1000 genomes]
rs9501517	0.83[ASN][1000 genomes]
rs9501518	0.83[ASN][1000 genomes]
rs9501524	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876957	chr3:74655909-74882285	Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv529994	chr3:74720752-75471887	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:74873000-74875000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:74873800-74875000	Enhancers	Pancreas	Pancrea

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