Variant report

Variant	rs17198862
Chromosome Location	chr5:8133055-8133056
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10512942	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13161935	0.84[EUR][1000 genomes]
rs13163063	0.90[CEU][hapmap];0.88[JPT][hapmap];0.83[EUR][1000 genomes]
rs13166872	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13182814	0.90[CEU][hapmap];0.90[JPT][hapmap];0.84[EUR][1000 genomes]
rs17131	0.91[CEU][hapmap];0.88[CHB][hapmap];0.91[JPT][hapmap];0.83[EUR][1000 genomes]
rs34411024	0.83[EUR][1000 genomes]
rs34799743	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35009176	0.84[EUR][1000 genomes]
rs6555516	0.83[EUR][1000 genomes]
rs6555517	0.91[CEU][hapmap];0.89[JPT][hapmap];0.84[EUR][1000 genomes]
rs6555518	0.84[EUR][1000 genomes]
rs6555519	0.83[EUR][1000 genomes]
rs6885738	0.85[CEU][hapmap];0.90[JPT][hapmap];0.84[EUR][1000 genomes]
rs7444691	0.83[EUR][1000 genomes]
rs7447098	0.84[EUR][1000 genomes]
rs7447152	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916892	chr5:7634377-8158890	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv533983	chr5:7701457-8275379	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv881419	chr5:8077509-8202536	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv1807789	chr5:8098293-8147530	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:8129800-8134800	Weak transcription	Gastric	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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