Variant report

Variant	rs17199737
Chromosome Location	chr4:158596104-158596105
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10017629	0.91[EUR][1000 genomes]
rs13133267	0.83[EUR][1000 genomes]
rs1490540	0.91[EUR][1000 genomes]
rs2345335	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4305568	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs66468124	0.80[EUR][1000 genomes]
rs67263451	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs68089363	0.80[EUR][1000 genomes]
rs6835594	0.91[EUR][1000 genomes]
rs6842465	0.91[EUR][1000 genomes]
rs6842990	0.91[EUR][1000 genomes]
rs6847661	0.91[EUR][1000 genomes]
rs9995432	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020294	chr4:157722712-158691771	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv537313	chr4:157722712-158691771	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv1018387	chr4:157959931-158764190	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	nsv437448	chr4:158550319-158597491	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv993476	chr4:158550643-159202015	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:158595000-158598000	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr4:158595400-158596200	Enhancers	Brain Hippocampus Middle	brain
3	chr4:158595400-158596200	Enhancers	Brain Substantia Nigra	brain
4	chr4:158595400-158596600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr4:158595400-158597200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr4:158595800-158596200	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
7	chr4:158595800-158596200	Active TSS	Brain Cingulate Gyrus	brain
8	chr4:158595800-158596200	Enhancers	Gastric	stomach
9	chr4:158595800-158596200	Enhancers	Pancreas	Pancrea
10	chr4:158595800-158596200	Enhancers	Psoas Muscle	Psoas
11	chr4:158595800-158596200	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr4:158595800-158596400	Enhancers	Fetal Brain Male	brain
13	chr4:158595800-158598400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr4:158596000-158596200	Enhancers	Aorta	Aorta
15	chr4:158596000-158596200	Active TSS	Brain Inferior Temporal Lobe	brain
16	chr4:158596000-158596200	Flanking Active TSS	Stomach Smooth Muscle	stomach
17	chr4:158596000-158596400	Active TSS	Brain Anterior Caudate	brain
18	chr4:158596000-158597000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links