Variant report

Variant	rs17201866
Chromosome Location	chr13:38264409-38264410
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs11147663	1.00[JPT][hapmap]
rs12583344	1.00[JPT][hapmap]
rs12585258	1.00[JPT][hapmap]
rs17056196	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs17197663	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs17197978	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs17199299	0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs17199750	0.92[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs17257154	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs17257328	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs17257579	0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs17258158	0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs17258368	0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs17261242	0.86[CEU][hapmap];0.88[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1924295	0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1924299	0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1924302	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1924303	1.00[JPT][hapmap]
rs1951895	0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs3829364	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs41306668	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4512969	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4628831	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs61532724	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6750	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs73182620	0.81[AMR][1000 genomes]
rs73182622	0.86[ASN][1000 genomes]
rs73182624	0.86[ASN][1000 genomes]
rs73182687	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs73182690	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs73184504	0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs73184521	0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs73184522	0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs73184523	0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs73184525	0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs73184528	0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs73184530	0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs73184531	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs73184532	0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs73184534	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs73186506	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73186523	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73186543	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73186546	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7338811	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9548007	1.00[JPT][hapmap]
rs9548010	0.89[JPT][hapmap]
rs9548011	1.00[JPT][hapmap]
rs9548017	1.00[JPT][hapmap]
rs9603242	0.89[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948975	chr13:37281203-38280430	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	esv34109	chr13:37843819-38276391	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv1045716	chr13:37952062-38394595	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv915901	chr13:38199035-39032633	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv826617	chr13:38264260-38264891	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:38211400-38275600	Weak transcription	Stomach Smooth Muscle	stomach
2	chr13:38254800-38267400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr13:38257400-38282000	Weak transcription	Ovary	ovary
4	chr13:38259600-38264600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr13:38260000-38269000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr13:38260000-38273800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr13:38261000-38274000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr13:38261200-38265000	Weak transcription	Osteobl	bone
9	chr13:38263200-38265800	Weak transcription	H1 Cell Line	embryonic stem cell

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