Variant report

Variant	rs17210156
Chromosome Location	chr21:17826778-17826779
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs963519	1.00[ASW][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064857	chr21:17628760-18533131	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	345 gene(s)	inside rSNPs	diseases
2	nsv544382	chr21:17628760-18533131	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	345 gene(s)	inside rSNPs	diseases
3	nsv913416	chr21:17728224-17863882	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:17809600-17828200	Weak transcription	Left Ventricle	heart
2	chr21:17814600-17828400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr21:17824200-17826800	Weak transcription	Brain Germinal Matrix	brain
4	chr21:17824600-17826800	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr21:17826000-17827400	Enhancers	Colon Smooth Muscle	Colon
6	chr21:17826200-17827200	Enhancers	Liver	Liver
7	chr21:17826200-17827400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr21:17826200-17827600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr21:17826200-17827800	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr21:17826400-17828000	Enhancers	Fetal Brain Male	brain
11	chr21:17826600-17827000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr21:17826600-17827000	Weak transcription	Adipose Nuclei	Adipose
13	chr21:17826600-17827200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr21:17826600-17828200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr21:17826600-17829600	Enhancers	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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