Variant report

Variant	rs17211649
Chromosome Location	chr14:21166283-21166284
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:21164524..21167490-chr14:21438103..21441098,2	MCF-7	breast:
2	chr14:21150635..21152793-chr14:21164788..21166730,2	K562	blood:
3	chr14:21164738..21167054-chr14:21324271..21326741,2	MCF-7	breast:
4	chr14:21165605..21166547-chr14:21323286..21324779,12	MCF-7	breast:
5	chr14:21165555..21167023-chr14:21225530..21226742,6	MCF-7	breast:
6	chr14:21165736..21166589-chr14:21325539..21326522,2	K562	blood:
7	chr14:21165816..21166697-chr14:21334782..21335644,3	MCF-7	breast:
8	chr14:21165305..21166567-chr14:21323518..21324499,14	K562	blood:
9	chr14:21165711..21166490-chr14:21341522..21342523,3	MCF-7	breast:
10	chr14:21165597..21166513-chr14:21341479..21342453,4	K562	blood:
11	chr14:21164754..21166727-chr14:21271228..21272913,2	K562	blood:
12	chr14:21151293..21153346-chr14:21164449..21166288,2	K562	blood:
13	chr14:21165600..21167287-chr14:21323145..21324514,10	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000214274	Chromatin interaction
ENSG00000129538	Chromatin interaction
ENSG00000258818	Chromatin interaction
ENSG00000259171	Chromatin interaction
ENSG00000259130	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11628774	0.82[CEU][hapmap];0.84[EUR][1000 genomes]
rs17242776	1.00[AFR][1000 genomes]
rs7155352	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043923	chr14:20338742-21336425	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	203 gene(s)	inside rSNPs	diseases
2	nsv541970	chr14:20338742-21336425	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	203 gene(s)	inside rSNPs	diseases
3	esv21015	chr14:20800765-21257878	Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	173 gene(s)	inside rSNPs	diseases
4	nsv1051489	chr14:21026592-21214763	Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
5	nsv1045004	chr14:21124345-21180397	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
6	nsv541975	chr14:21124345-21180397	Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:21153600-21169000	Weak transcription	Fetal Muscle Trunk	muscle
2	chr14:21153600-21169600	Weak transcription	Esophagus	oesophagus
3	chr14:21153600-21169800	Weak transcription	Fetal Muscle Leg	muscle
4	chr14:21154400-21167200	Weak transcription	Aorta	Aorta
5	chr14:21154400-21168800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr14:21154600-21167600	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr14:21155800-21167600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr14:21156200-21167200	Weak transcription	Gastric	stomach
9	chr14:21156200-21167400	Weak transcription	Colonic Mucosa	Colon
10	chr14:21157400-21167200	Weak transcription	Pancreas	Pancrea
11	chr14:21157600-21169800	Weak transcription	Fetal Intestine Large	intestine
12	chr14:21159200-21171000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr14:21159800-21169600	Weak transcription	Rectal Smooth Muscle	rectum
14	chr14:21160600-21168400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr14:21162200-21167000	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr14:21162200-21167600	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr14:21162200-21169800	Strong transcription	HepG2	liver
18	chr14:21162200-21171400	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr14:21162200-21174800	Weak transcription	Left Ventricle	heart
20	chr14:21162400-21167600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr14:21162400-21167600	Weak transcription	Duodenum Mucosa	Duodenum
22	chr14:21162400-21169800	Weak transcription	Lung	lung
23	chr14:21162400-21175000	Weak transcription	Fetal Lung	lung
24	chr14:21162600-21167000	Weak transcription	Liver	Liver
25	chr14:21162800-21167400	Weak transcription	Ovary	ovary
26	chr14:21162800-21169000	Weak transcription	Fetal Intestine Small	intestine
27	chr14:21163200-21167600	Weak transcription	Stomach Smooth Muscle	stomach
28	chr14:21164000-21170600	Weak transcription	Fetal Stomach	stomach
29	chr14:21164800-21167400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr14:21165000-21166400	Enhancers	Primary monocytes fromperipheralblood	blood
31	chr14:21165200-21166400	Enhancers	Stomach Mucosa	stomach
32	chr14:21165200-21166400	Enhancers	HUVEC	blood vessel
33	chr14:21165400-21166400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr14:21165400-21166400	Enhancers	Brain Hippocampus Middle	brain
35	chr14:21165600-21166400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr14:21165600-21166400	Enhancers	Brain Anterior Caudate	brain
37	chr14:21165600-21166400	Enhancers	Brain Inferior Temporal Lobe	brain
38	chr14:21165600-21166400	Enhancers	A549	lung
39	chr14:21165600-21172600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr14:21165800-21166400	Enhancers	iPS-15b Cell Line	embryonic stem cell
41	chr14:21165800-21166400	Enhancers	Brain Substantia Nigra	brain
42	chr14:21165800-21166400	Enhancers	Fetal Kidney	kidney
43	chr14:21165800-21166400	Enhancers	Rectal Mucosa Donor 29	rectum
44	chr14:21165800-21166600	Enhancers	Adipose Nuclei	Adipose
45	chr14:21165800-21166600	Enhancers	Brain Cingulate Gyrus	brain
46	chr14:21166000-21166400	Enhancers	Brain Angular Gyrus	brain
47	chr14:21166000-21169000	Weak transcription	Muscle Satellite Cultured Cells	--
48	chr14:21166000-21170200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
49	chr14:21166200-21167800	Weak transcription	Monocytes-CD14+_RO01746	blood
50	chr14:21166200-21172200	Weak transcription	H1 Cell Line	embryonic stem cell

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