Variant report

Variant	rs1721435
Chromosome Location	chr7:109234218-109234219
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10246352	0.89[ASN][1000 genomes]
rs1721434	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1721438	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1721926	0.83[ASN][1000 genomes]
rs1851827	0.89[ASN][1000 genomes]
rs2091133	0.90[ASN][1000 genomes]
rs2396135	0.80[ASN][1000 genomes]
rs2689963	0.92[ASN][1000 genomes]
rs2689964	0.92[ASN][1000 genomes]
rs2690365	0.81[EUR][1000 genomes]
rs35884256	0.88[ASN][1000 genomes]
rs62473271	0.91[ASN][1000 genomes]
rs62473273	0.91[ASN][1000 genomes]
rs62473274	0.91[ASN][1000 genomes]
rs62473275	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023379	chr7:109003574-109355234	Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv608079	chr7:109098364-109862289	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1020761	chr7:109208187-109275700	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:109221200-109234400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:109228400-109237800	Active TSS	iPS-15b Cell Line	embryonic stem cell
3	chr7:109229600-109234400	Active TSS	ES-I3 Cell Line	embryonic stem cell
4	chr7:109230800-109237400	Active TSS	H9 Cell Line	embryonic stem cell
5	chr7:109230800-109237800	Active TSS	HUES6 Cell Line	embryonic stem cell
6	chr7:109231800-109234400	Active TSS	iPS-18 Cell Line	embryonic stem cell
7	chr7:109233200-109237400	Active TSS	HUES64 Cell Line	embryonic stem cell
8	chr7:109233800-109237400	Active TSS	HUES48 Cell Line	embryonic stem cell
9	chr7:109233800-109237400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr7:109234000-109234600	Active TSS	iPS-20b Cell Line	embryonic stem cell
11	chr7:109234000-109235600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
12	chr7:109234000-109237400	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr7:109234000-109238600	Active TSS	H1 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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