Variant report

Variant	rs17215196
Chromosome Location	chr6:33237432-33237433
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:33214775..33224346-chr6:33236521..33248678,40	K562	blood:
2	chr6:33163540..33178083-chr6:33236797..33246926,29	MCF-7	breast:
3	chr16:89989726..89991860-chr6:33236742..33238787,2	MCF-7	breast:
4	chr15:91448191..91451047-chr6:33235612..33237550,2	MCF-7	breast:
5	chr6:32935365..32941512-chr6:33237253..33242856,9	MCF-7	breast:
6	chr6:33237079..33247876-chr6:33369927..33381738,26	K562	blood:
7	chr6:33165702..33182742-chr6:33234718..33250379,54	K562	blood:
8	chr6:33237157..33241221-chr6:33375922..33380109,6	MCF-7	breast:
9	chr6:33215322..33223570-chr6:33237379..33242085,16	MCF-7	breast:
10	chr6:33237328..33248026-chr6:33370896..33379989,29	K562	blood:
11	chr6:33164650..33184503-chr6:33230350..33245922,64	K562	blood:
12	chr6:32934872..32941448-chr6:33236243..33241295,9	MCF-7	breast:
13	chr6:33237283..33247485-chr6:33356185..33362256,17	K562	blood:
14	chr6:33237283..33241357-chr6:33358017..33360541,6	K562	blood:

No data

Variant related genes	Relation type
ENSG00000202441	Chromatin interaction
ENSG00000196547	Chromatin interaction
ENSG00000258947	Chromatin interaction
ENSG00000204228	Chromatin interaction
ENSG00000204227	Chromatin interaction
ENSG00000199036	Chromatin interaction
ENSG00000204231	Chromatin interaction
ENSG00000232940	Chromatin interaction
ENSG00000112473	Chromatin interaction
ENSG00000223837	Chromatin interaction
ENSG00000204257	Chromatin interaction
ENSG00000263756	Chromatin interaction
ENSG00000225463	Chromatin interaction
ENSG00000225644	Chromatin interaction
ENSG00000112511	Chromatin interaction
ENSG00000204256	Chromatin interaction
ENSG00000237649	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17215210	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17221597	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17221611	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41266713	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41266737	0.88[AFR][1000 genomes]
rs6902176	0.84[AFR][1000 genomes]
rs72654476	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72654477	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462893	chr6:33142539-33256471	Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
2	nsv602830	chr6:33142539-33256471	Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
3	nsv830634	chr6:33161217-33330745	Flanking Active TSS Genic enhancers Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	139 gene(s)	inside rSNPs	diseases
4	nsv462894	chr6:33174783-33254665	Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	87 gene(s)	inside rSNPs	diseases
5	nsv602831	chr6:33174783-33254665	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	87 gene(s)	inside rSNPs	diseases
6	nsv5249	chr6:33231743-33249478	Strong transcription Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	62 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33218000-33238800	Weak transcription	Right Atrium	heart
2	chr6:33223800-33237600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr6:33224400-33237600	Strong transcription	Thymus	Thymus
4	chr6:33224600-33237800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
5	chr6:33224600-33237800	Strong transcription	Fetal Muscle Trunk	muscle
6	chr6:33224600-33238000	Strong transcription	Fetal Stomach	stomach
7	chr6:33224800-33237600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
8	chr6:33224800-33237800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr6:33224800-33237800	Strong transcription	Fetal Thymus	thymus
10	chr6:33224800-33238000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr6:33225000-33237600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:33225000-33237600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr6:33225000-33237600	Strong transcription	Primary T helper cells fromperipheralblood	blood
14	chr6:33225000-33237600	Strong transcription	Liver	Liver
15	chr6:33225000-33238000	Strong transcription	Fetal Lung	lung
16	chr6:33225000-33238200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr6:33225200-33237600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr6:33225200-33237800	Strong transcription	Adipose Nuclei	Adipose
19	chr6:33225400-33237800	Strong transcription	Primary T cells fromperipheralblood	blood
20	chr6:33225800-33237800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr6:33226200-33237600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr6:33226200-33237600	Strong transcription	Fetal Intestine Large	intestine
23	chr6:33226600-33237600	Strong transcription	Primary B cells from peripheral blood	blood
24	chr6:33226600-33237800	Strong transcription	Brain Hippocampus Middle	brain
25	chr6:33226800-33237800	Strong transcription	Placenta	Placenta
26	chr6:33227000-33238000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr6:33227800-33238000	Strong transcription	Fetal Muscle Leg	muscle
28	chr6:33227800-33238200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr6:33228000-33238800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
30	chr6:33228200-33237800	Strong transcription	Brain Inferior Temporal Lobe	brain
31	chr6:33228400-33238200	Strong transcription	Fetal Intestine Small	intestine
32	chr6:33228800-33237600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr6:33229000-33238200	Strong transcription	Brain Cingulate Gyrus	brain
34	chr6:33229400-33237600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr6:33229400-33237600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr6:33230000-33237600	Strong transcription	HUES64 Cell Line	embryonic stem cell
37	chr6:33230000-33237600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr6:33230000-33237600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr6:33230000-33237600	Strong transcription	Stomach Smooth Muscle	stomach
40	chr6:33230000-33237800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
41	chr6:33230000-33237800	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr6:33230200-33238000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr6:33230200-33238000	Strong transcription	Duodenum Mucosa	Duodenum
44	chr6:33230400-33237600	Strong transcription	HUES6 Cell Line	embryonic stem cell
45	chr6:33230400-33237600	Strong transcription	Primary B cells from cord blood	blood
46	chr6:33230400-33238000	Strong transcription	HUES48 Cell Line	embryonic stem cell
47	chr6:33230400-33238000	Strong transcription	Left Ventricle	heart
48	chr6:33230600-33237600	Strong transcription	Right Ventricle	heart
49	chr6:33230600-33237600	Strong transcription	Osteobl	bone
50	chr6:33230600-33238000	Strong transcription	Spleen	Spleen

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