Variant report

Variant	rs17218879
Chromosome Location	chr9:14768540-14768541
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:14692712..14694901-chr9:14767288..14769707,2	MCF-7	breast:
2	chr9:14465013..14466518-chr9:14768250..14769873,6	MCF-7	breast:
3	chr9:14441846..14442823-chr9:14768420..14769609,5	MCF-7	breast:
4	chr9:14616185..14616937-chr9:14768483..14769168,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000175893	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10733289	0.81[CEU][hapmap]
rs13284988	0.84[CHB][hapmap];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13294910	0.92[CEU][hapmap];0.94[JPT][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13296345	0.81[CEU][hapmap]
rs1494348	0.92[CEU][hapmap];0.89[JPT][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17218712	0.88[CEU][hapmap];0.81[CHB][hapmap];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1874109	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1994919	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34882821	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62535349	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6474856	0.96[CEU][hapmap];0.95[JPT][hapmap];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7025956	0.92[CEU][hapmap];0.83[CHB][hapmap];0.90[JPT][hapmap];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7046483	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs923926	0.87[CEU][hapmap];0.87[CHB][hapmap];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029491	chr9:14033607-14942373	Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv915804	chr9:14182608-14903050	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv613637	chr9:14524438-15011915	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	esv3362157	chr9:14542189-14791977	ZNF genes & repeats Enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1025566	chr9:14687088-14791199	ZNF genes & repeats Strong transcription Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1023955	chr9:14754010-14800259	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	esv2761502	chr9:14757877-14827373	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv831518	chr9:14760638-14953501	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
9	nsv892615	chr9:14761260-14782367	Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv892616	chr9:14762700-14780698	Genic enhancers Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:14745000-14809800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr9:14748800-14775600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr9:14748800-14775800	Weak transcription	Fetal Muscle Trunk	muscle
4	chr9:14748800-14790000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr9:14752800-14775800	Weak transcription	Duodenum Mucosa	Duodenum
6	chr9:14755800-14775600	Weak transcription	Fetal Stomach	stomach
7	chr9:14755800-14812400	Weak transcription	Pancreas	Pancrea
8	chr9:14757000-14771800	Strong transcription	Fetal Kidney	kidney
9	chr9:14758400-14793400	Weak transcription	Aorta	Aorta
10	chr9:14760000-14775200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr9:14763000-14770800	Strong transcription	Fetal Lung	lung
12	chr9:14764800-14809600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr9:14766600-14787400	Weak transcription	Fetal Intestine Large	intestine
14	chr9:14766800-14775400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr9:14767200-14769200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr9:14767200-14779200	Weak transcription	Adipose Nuclei	Adipose
17	chr9:14767400-14779000	Weak transcription	Fetal Muscle Leg	muscle
18	chr9:14768000-14769000	Enhancers	HUVEC	blood vessel
19	chr9:14768000-14773400	Weak transcription	HepG2	liver
20	chr9:14768200-14768600	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr9:14768200-14768600	Enhancers	Pancreatic Islets	Pancreatic Islet
22	chr9:14768400-14768600	Enhancers	iPS-20b Cell Line	embryonic stem cell
23	chr9:14768400-14768600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr9:14768400-14768600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr9:14768400-14768600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr9:14768400-14768600	Flanking Active TSS	Brain Anterior Caudate	brain
27	chr9:14768400-14768600	Enhancers	Brain Cingulate Gyrus	brain
28	chr9:14768400-14768600	Enhancers	Fetal Heart	heart
29	chr9:14768400-14768600	Enhancers	Fetal Intestine Small	intestine
30	chr9:14768400-14768600	Flanking Active TSS	A549	lung
31	chr9:14768400-14768600	Flanking Active TSS	HMEC	breast
32	chr9:14768400-14768800	Enhancers	Primary B cells from peripheral blood	blood
33	chr9:14768400-14768800	Bivalent Enhancer	Liver	Liver
34	chr9:14768400-14768800	Enhancers	Rectal Smooth Muscle	rectum
35	chr9:14768400-14769000	Enhancers	HUES48 Cell Line	embryonic stem cell
36	chr9:14768400-14769000	Enhancers	HUES6 Cell Line	embryonic stem cell
37	chr9:14768400-14769000	Enhancers	Colon Smooth Muscle	Colon
38	chr9:14768400-14769200	Enhancers	iPS-15b Cell Line	embryonic stem cell

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