Variant report

Variant	rs17219583
Chromosome Location	chr4:173045975-173045976
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:173044765..173047088-chr4:173079420..173082329,2	K562	blood:
2	chr4:173044514..173046349-chr4:173049744..173052591,2	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10003069	0.86[CEU][hapmap]
rs10012756	0.86[CEU][hapmap]
rs10014481	0.85[CEU][hapmap]
rs10015076	0.83[CEU][hapmap]
rs10016776	0.85[CEU][hapmap]
rs10026247	0.81[CEU][hapmap]
rs10028922	0.82[CEU][hapmap]
rs11132930	0.86[CEU][hapmap]
rs12506901	0.85[CEU][hapmap]
rs1491617	0.86[CEU][hapmap]
rs17058064	0.80[CEU][hapmap]
rs2067512	0.80[CEU][hapmap]
rs4692912	0.82[CEU][hapmap]
rs6553608	0.85[CEU][hapmap]
rs6553609	0.86[CEU][hapmap]
rs6553610	0.85[CEU][hapmap]
rs6553611	0.85[CEU][hapmap]
rs6840554	0.82[CEU][hapmap]
rs6840612	0.82[CEU][hapmap]
rs6846244	0.80[CEU][hapmap]
rs6852117	0.85[CEU][hapmap]
rs719799	0.85[CEU][hapmap]
rs72700957	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7377366	0.86[CEU][hapmap]
rs7377766	0.85[CEU][hapmap]
rs7685381	0.86[CEU][hapmap]
rs7697010	0.81[CEU][hapmap]
rs9884573	0.82[CEU][hapmap]
rs9991515	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022527	chr4:172547732-173236939	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv537357	chr4:172547732-173236939	Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1024693	chr4:172609237-173236939	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv498033	chr4:172830955-173121438	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv830152	chr4:172906364-173087067	Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv980436	chr4:173005588-173060038	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
7	nsv830153	chr4:173038006-173211957	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:173043600-173052800	Weak transcription	K562	blood
2	chr4:173045800-173047800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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