Variant report

Variant	rs1722207
Chromosome Location	chr7:101335464-101335465
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:101329586..101337237-chr7:101456658..101461622,22	MCF-7	breast:
2	chr7:101330039..101336974-chr7:101455968..101461022,11	MCF-7	breast:

Variant related genes	Relation type
ENSG00000257923	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12534998	0.85[ASN][1000 genomes]
rs12535663	0.83[ASN][1000 genomes]
rs1965519	0.81[CHB][hapmap]
rs2429068	0.83[ASN][1000 genomes]
rs2529179	0.81[ASN][1000 genomes]
rs2529182	0.81[ASN][1000 genomes]
rs2529186	0.82[ASN][1000 genomes]
rs2529187	0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs2529188	0.83[ASN][1000 genomes]
rs2529189	0.83[ASN][1000 genomes]
rs2529190	0.81[CHB][hapmap];0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs2529246	0.81[ASN][1000 genomes]
rs2690890	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs2690902	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933653	chr7:100701931-101515782	Active TSS ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv1018544	chr7:101225639-101424889	Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv539045	chr7:101225639-101424889	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv482758	chr7:101231458-101395219	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv831079	chr7:101273495-101466776	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
6	esv3516908	chr7:101333317-101335769	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101332000-101376800	Weak transcription	Right Atrium	heart
2	chr7:101332600-101335600	Weak transcription	Hela-S3	cervix
3	chr7:101332600-101337000	Weak transcription	Placenta	Placenta
4	chr7:101334000-101335800	Weak transcription	Fetal Heart	heart
5	chr7:101334600-101335800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr7:101335000-101335600	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr7:101335000-101335600	Enhancers	Primary hematopoietic stem cells	blood
8	chr7:101335000-101335600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
9	chr7:101335000-101335800	Enhancers	Colonic Mucosa	Colon
10	chr7:101335000-101335800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
11	chr7:101335200-101335600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr7:101335200-101335600	Enhancers	Primary B cells from peripheral blood	blood
13	chr7:101335200-101335600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr7:101335200-101335600	Flanking Active TSS	Duodenum Mucosa	Duodenum
15	chr7:101335200-101335600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
16	chr7:101335200-101335600	Enhancers	Thymus	Thymus
17	chr7:101335200-101335800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr7:101335200-101335800	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr7:101335200-101335800	Enhancers	Primary hematopoietic stem cells short term culture	blood
20	chr7:101335200-101335800	Enhancers	Pancreas	Pancrea
21	chr7:101335200-101336000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr7:101335200-101336000	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr7:101335200-101336000	Enhancers	Liver	Liver
24	chr7:101335200-101336000	Enhancers	A549	lung
25	chr7:101335200-101336000	Enhancers	GM12878-XiMat	blood
26	chr7:101335200-101336200	Enhancers	Rectal Mucosa Donor 31	rectum
27	chr7:101335400-101335600	Enhancers	ES-I3 Cell Line	embryonic stem cell
28	chr7:101335400-101335600	Enhancers	HUES48 Cell Line	embryonic stem cell
29	chr7:101335400-101335600	Enhancers	HUES64 Cell Line	embryonic stem cell
30	chr7:101335400-101335600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr7:101335400-101335600	Enhancers	Primary neutrophils fromperipheralblood	blood
32	chr7:101335400-101335600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
33	chr7:101335400-101335600	Enhancers	Brain Inferior Temporal Lobe	brain
34	chr7:101335400-101335800	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr7:101335400-101335800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
36	chr7:101335400-101335800	Flanking Active TSS	Fetal Intestine Small	intestine
37	chr7:101335400-101335800	Enhancers	Fetal Thymus	thymus
38	chr7:101335400-101335800	Enhancers	Spleen	Spleen
39	chr7:101335400-101336000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr7:101335400-101336000	Enhancers	Fetal Intestine Large	intestine
41	chr7:101335400-101336000	Enhancers	Fetal Kidney	kidney
42	chr7:101335400-101336000	Enhancers	Rectal Mucosa Donor 29	rectum
43	chr7:101335400-101336000	Flanking Active TSS	HepG2	liver
44	chr7:101335400-101337600	Enhancers	Stomach Mucosa	stomach

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