Variant report

Variant	rs17224234
Chromosome Location	chr2:47640971-47640972
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:47629127..47633202-chr2:47637994..47643182,6	K562	blood:

Variant related genes	Relation type
ENSG00000095002	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12612295	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12621761	0.92[AMR][1000 genomes]
rs12622068	0.85[AMR][1000 genomes]
rs17218006	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17218041	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17218244	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17218384	0.82[EUR][1000 genomes]
rs17224276	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17224304	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28667964	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817517	chr2:46819371-47715140	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	152 gene(s)	inside rSNPs	diseases
2	nsv1004828	chr2:47056849-47814482	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
3	nsv531348	chr2:47433147-47827310	Flanking Bivalent TSS/Enh Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
4	nsv999576	chr2:47506116-47773960	Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:47631200-47642000	Weak transcription	Aorta	Aorta
2	chr2:47631400-47657400	Weak transcription	HSMMtube	muscle
3	chr2:47631400-47697000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr2:47631400-47714400	Weak transcription	Right Ventricle	heart
5	chr2:47631600-47657400	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr2:47631800-47641000	Weak transcription	HMEC	breast
7	chr2:47631800-47642000	Weak transcription	Colon Smooth Muscle	Colon
8	chr2:47631800-47642000	Weak transcription	Spleen	Spleen
9	chr2:47631800-47642600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr2:47631800-47643000	Weak transcription	NHDF-Ad	bronchial
11	chr2:47631800-47643200	Weak transcription	HSMM	muscle
12	chr2:47631800-47643400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr2:47631800-47643400	Weak transcription	Fetal Heart	heart
14	chr2:47631800-47643800	Weak transcription	Osteobl	bone
15	chr2:47631800-47646000	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr2:47631800-47647400	Weak transcription	Primary monocytes fromperipheralblood	blood
17	chr2:47631800-47649000	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr2:47631800-47649200	Weak transcription	NHEK	skin
19	chr2:47631800-47650000	Weak transcription	NHLF	lung
20	chr2:47631800-47657000	Weak transcription	Primary neutrophils fromperipheralblood	blood
21	chr2:47631800-47657400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr2:47631800-47657400	Weak transcription	Brain Angular Gyrus	brain
23	chr2:47631800-47657400	Weak transcription	Brain Hippocampus Middle	brain
24	chr2:47631800-47657400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr2:47631800-47657400	Weak transcription	Small Intestine	intestine
26	chr2:47631800-47657600	Weak transcription	Rectal Smooth Muscle	rectum
27	chr2:47631800-47659400	Weak transcription	Right Atrium	heart
28	chr2:47631800-47672000	Weak transcription	Pancreas	Pancrea
29	chr2:47631800-47696600	Weak transcription	Esophagus	oesophagus
30	chr2:47631800-47700000	Weak transcription	Colonic Mucosa	Colon
31	chr2:47631800-47704200	Weak transcription	Psoas Muscle	Psoas
32	chr2:47632000-47643200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
33	chr2:47632000-47643400	Weak transcription	Fetal Brain Male	brain
34	chr2:47632600-47659600	Strong transcription	Fetal Thymus	thymus
35	chr2:47632800-47649200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr2:47632800-47659600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
37	chr2:47633000-47643400	Strong transcription	Thymus	Thymus
38	chr2:47633000-47648000	Strong transcription	Fetal Muscle Leg	muscle
39	chr2:47633000-47659600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr2:47633000-47659600	Strong transcription	Fetal Stomach	stomach
41	chr2:47633000-47714000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
42	chr2:47634000-47654200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr2:47634600-47647800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr2:47634600-47657600	Strong transcription	HUES48 Cell Line	embryonic stem cell
45	chr2:47634600-47657600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
46	chr2:47634600-47657800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr2:47634800-47648400	Strong transcription	H9 Cell Line	embryonic stem cell
48	chr2:47634800-47657000	Strong transcription	HUES64 Cell Line	embryonic stem cell
49	chr2:47634800-47658800	Strong transcription	HUES6 Cell Line	embryonic stem cell
50	chr2:47634800-47659600	Strong transcription	Dnd41	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links