Variant report

Variant	rs17226184
Chromosome Location	chr13:39554886-39554887
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12428338	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12428487	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12429615	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12430798	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12431327	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17226219	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17226809	1.00[CEU][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs41286945	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	esv2753642	chr13:39522300-39649000	Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	10 gene(s)	inside rSNPs	diseases
3	esv2753553	chr13:39526600-39649000	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39553800-39555000	Enhancers	Brain Inferior Temporal Lobe	brain
2	chr13:39553800-39555000	Enhancers	Brain Substantia Nigra	brain
3	chr13:39553800-39555600	Enhancers	Fetal Muscle Leg	muscle
4	chr13:39553800-39555600	Enhancers	Fetal Stomach	stomach
5	chr13:39554000-39555000	Enhancers	HSMMtube	muscle
6	chr13:39554000-39555200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr13:39554000-39555200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr13:39554000-39555200	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr13:39554000-39555200	Enhancers	Brain Germinal Matrix	brain
10	chr13:39554000-39555200	Enhancers	Fetal Muscle Trunk	muscle
11	chr13:39554000-39555400	Enhancers	H1 Cell Line	embryonic stem cell
12	chr13:39554000-39555600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr13:39554000-39555600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr13:39554000-39555600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr13:39554000-39555600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr13:39554000-39555600	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr13:39554000-39555600	Enhancers	Pancreas	Pancrea
18	chr13:39554000-39556000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
19	chr13:39554000-39556000	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr13:39554200-39555200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr13:39554200-39555400	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr13:39554400-39555200	Enhancers	Brain Cingulate Gyrus	brain
23	chr13:39554400-39555600	Enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr13:39554400-39555600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr13:39554400-39555600	Enhancers	iPS-18 Cell Line	embryonic stem cell
26	chr13:39554600-39555000	Enhancers	Brain Hippocampus Middle	brain
27	chr13:39554600-39555400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr13:39554600-39555400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr13:39554600-39556000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr13:39554800-39555400	Enhancers	iPS-15b Cell Line	embryonic stem cell
31	chr13:39554800-39555600	Enhancers	H9 Cell Line	embryonic stem cell
32	chr13:39554800-39555600	Enhancers	HUES48 Cell Line	embryonic stem cell

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