Variant report

Variant rs17229438
Chromosome Location chr15:45008694-45008695
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:123 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr15:45003200-45011600 Transcr. at gene 5' and 3' Primary T helper 17 cells PMA-I stimulated --
2 chr15:45003800-45010600 Transcr. at gene 5' and 3' Primary T regulatory cells fromperipheralblood blood
3 chr15:45004200-45012400 Transcr. at gene 5' and 3' Primary T helper cells PMA-I stimulated --
4 chr15:45004400-45009000 Transcr. at gene 5' and 3' Primary Natural Killer cells fromperipheralblood blood
5 chr15:45004400-45009400 Transcr. at gene 5' and 3' Primary T cells fromperipheralblood blood
6 chr15:45004400-45009800 Transcr. at gene 5' and 3' Primary T helper naive cells from peripheral blood blood
7 chr15:45004600-45020600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
8 chr15:45004800-45008800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
9 chr15:45005000-45018400 Weak transcription ES-WA7 Cell Line embryonic stem cell
10 chr15:45005000-45018600 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
11 chr15:45005200-45011400 Transcr. at gene 5' and 3' GM12878-XiMat blood
12 chr15:45005400-45010200 Weak transcription Brain Germinal Matrix brain
13 chr15:45005600-45009200 Transcr. at gene 5' and 3' Primary T helper memory cells from peripheral blood 1 blood
14 chr15:45005800-45009000 Transcr. at gene 5' and 3' Primary T killer naive cells fromperipheralblood blood
15 chr15:45005800-45009200 Transcr. at gene 5' and 3' Monocytes-CD14+_RO01746 blood
16 chr15:45006000-45012200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
17 chr15:45006200-45010000 Transcr. at gene 5' and 3' Primary T cells from cord blood blood
18 chr15:45006400-45009200 Transcr. at gene 5' and 3' Primary T cells effector/memory enriched fromperipheralblood blood
19 chr15:45006600-45008800 Genic enhancers Skeletal Muscle Male skeletal muscle
20 chr15:45006600-45011200 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
21 chr15:45006600-45011200 Strong transcription HSMM muscle
22 chr15:45006800-45008800 Genic enhancers Dnd41 blood
23 chr15:45006800-45009800 Genic enhancers Primary neutrophils fromperipheralblood blood
24 chr15:45006800-45012000 Strong transcription Osteobl bone
25 chr15:45007000-45009200 Strong transcription HepG2 liver
26 chr15:45007000-45009800 Weak transcription Fetal Intestine Small intestine
27 chr15:45007000-45010600 Strong transcription K562 blood
28 chr15:45007000-45010800 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
29 chr15:45007000-45011200 Strong transcription Fetal Muscle Trunk muscle
30 chr15:45007000-45011400 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
31 chr15:45007000-45011400 Strong transcription HUVEC blood vessel
32 chr15:45007000-45011600 Strong transcription NH-A brain
33 chr15:45007200-45008800 Transcr. at gene 5' and 3' Primary T killer memory cells from peripheral blood blood
34 chr15:45007200-45009000 Transcr. at gene 5' and 3' Primary T helper memory cells from peripheral blood 2 blood
35 chr15:45007200-45009000 Genic enhancers Fetal Thymus thymus
36 chr15:45007200-45009000 Genic enhancers Skeletal Muscle Female skeletal muscle
37 chr15:45007200-45009600 Strong transcription Fetal Intestine Large intestine
38 chr15:45007200-45009600 Strong transcription NHEK skin
39 chr15:45007200-45010800 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
40 chr15:45007200-45011200 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
41 chr15:45007200-45011200 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
42 chr15:45007200-45011400 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
43 chr15:45007200-45011600 Genic enhancers Primary monocytes fromperipheralblood blood
44 chr15:45007200-45011600 Strong transcription HSMMtube muscle
45 chr15:45007200-45012000 Strong transcription Muscle Satellite Cultured Cells --
46 chr15:45007400-45008800 Strong transcription Fetal Stomach stomach
47 chr15:45007400-45008800 Genic enhancers Left Ventricle heart
48 chr15:45007400-45008800 Genic enhancers Spleen Spleen
49 chr15:45007400-45009000 Genic enhancers Rectal Mucosa Donor 31 rectum
50 chr15:45007400-45010800 Strong transcription Gastric stomach

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