Variant report

Variant	rs17232085
Chromosome Location	chr2:148690011-148690012
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs17218966	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17219071	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17219169	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17225235	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17225388	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17225514	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17225527	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17225601	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17225607	1.00[ASN][1000 genomes]
rs17225649	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17225677	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17231959	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17232029	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17232064	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73003437	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875275	chr2:148166428-148711242	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv916286	chr2:148438001-148977722	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv529388	chr2:148471340-148934846	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	esv3392562	chr2:148476961-148843061	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv1009602	chr2:148668195-148844240	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
6	nsv535967	chr2:148668195-148844240	Weak transcription Flanking Active TSS Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
7	nsv1000246	chr2:148669162-148780280	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
8	nsv535968	chr2:148669162-148780280	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
9	nsv535969	chr2:148677122-148715921	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:148637200-148752600	Weak transcription	Small Intestine	intestine
2	chr2:148646600-148691000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr2:148647200-148719600	Weak transcription	Pancreas	Pancrea
4	chr2:148650200-148719600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr2:148651200-148691600	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr2:148652800-148693600	Weak transcription	Lung	lung
7	chr2:148653200-148692000	Weak transcription	Ovary	ovary
8	chr2:148653200-148719600	Weak transcription	Esophagus	oesophagus
9	chr2:148658800-148741600	Weak transcription	Aorta	Aorta
10	chr2:148659600-148719800	Weak transcription	Gastric	stomach
11	chr2:148661600-148718200	Weak transcription	Fetal Intestine Small	intestine
12	chr2:148663000-148692200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr2:148664600-148721200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr2:148664800-148693800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr2:148668600-148691800	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr2:148670600-148690200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr2:148671200-148690200	Weak transcription	Placenta	Placenta
18	chr2:148671600-148690200	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr2:148671800-148690200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr2:148671800-148691800	Weak transcription	NHLF	lung
21	chr2:148671800-148692000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr2:148671800-148698800	Weak transcription	NHEK	skin
23	chr2:148671800-148719600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr2:148672000-148691400	Weak transcription	Brain Anterior Caudate	brain
25	chr2:148672000-148692000	Weak transcription	Brain Substantia Nigra	brain
26	chr2:148672000-148692800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr2:148672000-148693000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr2:148672200-148693800	Weak transcription	HUVEC	blood vessel
29	chr2:148672200-148695800	Weak transcription	Brain Cingulate Gyrus	brain
30	chr2:148672200-148706800	Weak transcription	Brain Germinal Matrix	brain
31	chr2:148672400-148692800	Weak transcription	Stomach Mucosa	stomach
32	chr2:148674400-148692000	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr2:148675000-148690200	Weak transcription	Primary T helper cells fromperipheralblood	blood
34	chr2:148675400-148708800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr2:148676200-148722400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
36	chr2:148676600-148690400	Weak transcription	Primary B cells from cord blood	blood
37	chr2:148676600-148693600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr2:148677200-148696200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
39	chr2:148678000-148718200	Weak transcription	Right Ventricle	heart
40	chr2:148679000-148718800	Weak transcription	Fetal Stomach	stomach
41	chr2:148679600-148737200	Weak transcription	Hela-S3	cervix
42	chr2:148681000-148729600	Weak transcription	NHDF-Ad	bronchial
43	chr2:148683000-148708400	Weak transcription	Rectal Smooth Muscle	rectum
44	chr2:148683000-148725200	Weak transcription	Fetal Heart	heart
45	chr2:148683200-148708800	Weak transcription	Psoas Muscle	Psoas
46	chr2:148683400-148691600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
47	chr2:148683600-148690200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
48	chr2:148683800-148691800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
49	chr2:148684200-148691000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr2:148684200-148691600	Weak transcription	Brain Hippocampus Middle	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links