Variant report

Variant	rs17232408
Chromosome Location	chr4:102003070-102003071
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:102002819..102006552-chr4:102008416..102011880,4	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs56218352	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931418	chr4:101500167-102443207	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv879669	chr4:101989816-102040091	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv879670	chr4:101989816-102043610	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv879671	chr4:101989816-102048076	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv879672	chr4:101989816-102058842	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv879673	chr4:102002123-102043610	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv879674	chr4:102002123-102048076	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:101941200-102035600	Weak transcription	Fetal Intestine Small	intestine
2	chr4:101942600-102003200	Weak transcription	Rectal Smooth Muscle	rectum
3	chr4:101942600-102024400	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr4:101943800-102023400	Weak transcription	Fetal Lung	lung
5	chr4:101947800-102012600	Weak transcription	Fetal Muscle Leg	muscle
6	chr4:101953600-102015200	Weak transcription	Fetal Intestine Large	intestine
7	chr4:101959000-102023000	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr4:101960800-102004000	Weak transcription	Fetal Muscle Trunk	muscle
9	chr4:101960800-102004200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr4:101960800-102019800	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr4:101961000-102024600	Weak transcription	NHEK	skin
12	chr4:101961200-102024600	Weak transcription	Small Intestine	intestine
13	chr4:101966600-102007800	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr4:101966800-102007800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr4:101978000-102024600	Weak transcription	Left Ventricle	heart
16	chr4:101978400-102023000	Weak transcription	NHLF	lung
17	chr4:101980000-102023200	Weak transcription	NHDF-Ad	bronchial
18	chr4:101980800-102004600	Strong transcription	Primary B cells from cord blood	blood
19	chr4:101981600-102010600	Weak transcription	Aorta	Aorta
20	chr4:101981800-102025000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr4:101982000-102023000	Weak transcription	Osteobl	bone
22	chr4:101982200-102005200	Weak transcription	A549	lung
23	chr4:101982400-102003200	Weak transcription	Adipose Nuclei	Adipose
24	chr4:101982400-102024400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr4:101986000-102010200	Weak transcription	Psoas Muscle	Psoas
26	chr4:101986200-102023000	Weak transcription	Fetal Brain Female	brain
27	chr4:101988000-102010800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr4:101988200-102024400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
29	chr4:101988400-102023800	Weak transcription	Fetal Kidney	kidney
30	chr4:101988600-102004200	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr4:101989400-102024600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr4:101989600-102003200	Weak transcription	Primary hematopoietic stem cells	blood
33	chr4:101990000-102014200	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr4:101991800-102015600	Weak transcription	Placenta	Placenta
35	chr4:101992400-102010000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr4:101992400-102010400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr4:101992400-102024600	Weak transcription	Pancreas	Pancrea
38	chr4:101992800-102023600	Weak transcription	NH-A	brain
39	chr4:101993000-102031600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr4:101993600-102010400	Weak transcription	HUES64 Cell Line	embryonic stem cell
41	chr4:101994400-102007800	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr4:101994800-102004400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr4:101994800-102029800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
44	chr4:101995800-102009200	Weak transcription	Fetal Brain Male	brain
45	chr4:101996600-102024600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
46	chr4:101997000-102004600	Strong transcription	Primary B cells from peripheral blood	blood
47	chr4:101997600-102023400	Weak transcription	Skeletal Muscle Male	skeletal muscle
48	chr4:101997800-102012600	Weak transcription	Brain Hippocampus Middle	brain
49	chr4:101997800-102034600	Weak transcription	HepG2	liver
50	chr4:101998400-102004200	Weak transcription	Brain Anterior Caudate	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links