Variant report

Variant	rs17235139
Chromosome Location	chr13:39673852-39673853
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12428338	1.00[AFR][1000 genomes]
rs12430798	1.00[AFR][1000 genomes]
rs12431010	1.00[AFR][1000 genomes]
rs12431083	1.00[AFR][1000 genomes]
rs12431327	1.00[AFR][1000 genomes]
rs1575886	1.00[AFR][1000 genomes]
rs17226809	1.00[AFR][1000 genomes]
rs17235076	1.00[AFR][1000 genomes]
rs17826253	1.00[AFR][1000 genomes]
rs17826747	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1853971	0.96[EUR][1000 genomes]
rs41286135	1.00[AFR][1000 genomes]
rs41286945	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1035255	chr13:39618302-39715336	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39669000-39677000	Weak transcription	Brain Hippocampus Middle	brain
2	chr13:39673200-39674200	Weak transcription	Fetal Brain Female	brain
3	chr13:39673400-39674200	Enhancers	Fetal Brain Male	brain
4	chr13:39673600-39677200	Weak transcription	Fetal Muscle Leg	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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