Variant report

Variant	rs17236341
Chromosome Location	chr15:59243668-59243669
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:59223756..59226202-chr15:59242741..59245507,3	K562	blood:
2	chr15:59224218..59225991-chr15:59242359..59245352,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000137776	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10444803	0.88[ASN][1000 genomes]
rs10444841	0.87[ASN][1000 genomes]
rs11854784	0.88[ASN][1000 genomes]
rs11855896	0.86[ASN][1000 genomes]
rs11858479	0.87[ASN][1000 genomes]
rs12900291	0.86[ASN][1000 genomes]
rs12911441	0.89[ASN][1000 genomes]
rs2899637	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35124643	0.90[ASN][1000 genomes]
rs35473102	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4465553	0.90[ASN][1000 genomes]
rs4600408	0.90[ASN][1000 genomes]
rs4774316	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4775106	0.89[ASN][1000 genomes]
rs4775108	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4775109	0.86[AMR][1000 genomes]
rs56312422	0.88[ASN][1000 genomes]
rs56402153	0.87[ASN][1000 genomes]
rs61668497	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62002471	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7167050	0.90[ASN][1000 genomes]
rs8024549	0.90[ASN][1000 genomes]
rs8028502	0.87[ASN][1000 genomes]
rs8028828	0.88[ASN][1000 genomes]
rs8031016	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8031213	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34110	chr15:58949991-59381634	Weak transcription Bivalent Enhancer Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
3	esv1850946	chr15:59174539-59429160	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59226600-59244400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr15:59242200-59244400	Weak transcription	Esophagus	oesophagus
3	chr15:59242600-59244600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr15:59242600-59249400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr15:59242800-59249400	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr15:59243000-59244400	Weak transcription	Gastric	stomach
7	chr15:59243200-59244000	Enhancers	NHDF-Ad	bronchial
8	chr15:59243400-59244000	Flanking Active TSS	NHEK	skin
9	chr15:59243400-59244200	Enhancers	Adipose Nuclei	Adipose
10	chr15:59243400-59245200	Enhancers	Placenta	Placenta
11	chr15:59243400-59245400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr15:59243400-59245400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr15:59243400-59245400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr15:59243400-59245400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr15:59243400-59245600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr15:59243400-59245800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr15:59243400-59245800	Enhancers	HMEC	breast
18	chr15:59243600-59243800	Enhancers	Fetal Muscle Leg	muscle
19	chr15:59243600-59243800	Enhancers	Pancreas	Pancrea
20	chr15:59243600-59244000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr15:59243600-59244200	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr15:59243600-59244400	Enhancers	Fetal Kidney	kidney
23	chr15:59243600-59244400	Enhancers	HSMMtube	muscle
24	chr15:59243600-59244800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr15:59243600-59245200	Enhancers	Small Intestine	intestine
26	chr15:59243600-59245200	Enhancers	HUVEC	blood vessel
27	chr15:59243600-59245400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr15:59243600-59245400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr15:59243600-59245400	Enhancers	Osteobl	bone
30	chr15:59243600-59245800	Enhancers	Stomach Mucosa	stomach

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