Variant report

Variant	rs172366
Chromosome Location	chr2:191191233-191191234
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:191188679..191191658-chr2:191193316..191194937,2	K562	blood:

Extended variants
information (count: 49 )
Associated
traits (count: 9 )

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs12693568	1.00[CEU][hapmap];0.83[YRI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13006833	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1866849	0.90[YRI][hapmap]
rs1876877	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2136566	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2136568	0.83[YRI][hapmap]
rs2136569	1.00[CEU][hapmap];0.93[JPT][hapmap];0.82[YRI][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2582735	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2582736	0.96[CEU][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2582743	0.89[YRI][hapmap]
rs2582744	0.86[YRI][hapmap]
rs2582746	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2582766	0.81[AMR][1000 genomes]
rs2582770	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2664251	1.00[CEU][hapmap];0.94[JPT][hapmap];0.94[YRI][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2664252	0.96[CEU][hapmap];0.94[JPT][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2664253	1.00[CEU][hapmap];0.93[JPT][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2664256	0.82[YRI][hapmap]
rs2664259	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2664260	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs291413	0.81[YRI][hapmap]
rs291418	0.90[YRI][hapmap]
rs291427	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs291428	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs291429	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs291430	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs291431	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs291435	0.87[YRI][hapmap]
rs291444	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs291445	1.00[CEU][hapmap];0.92[YRI][hapmap];0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs291447	1.00[CEU][hapmap];0.90[YRI][hapmap];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs291448	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs291449	1.00[CEU][hapmap];0.90[YRI][hapmap];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs291451	0.86[YRI][hapmap]
rs291453	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs291458	1.00[CEU][hapmap];0.90[YRI][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs291459	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs291460	1.00[CEU][hapmap];0.96[YRI][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs291461	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs291462	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs291463	0.80[YRI][hapmap]
rs291464	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs291466	0.96[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs291468	1.00[CEU][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs291470	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs291472	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2919677	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6434387	1.00[CEU][hapmap];0.84[YRI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs906916	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]

mRNA abundance (count:9)

SNP	Gene	Cis/trans	Tissue	Source
rs172366	HIBCH	cis	Lymphoblastoid	GTEx
rs172366	HIBCH	cis	multi-tissue	Pritchard
rs172366	HIBCH	cis	Muscle Skeletal	GTEx
rs172366	HIBCH	cis	Heart Left Ventricle	GTEx
rs172366	HIBCH	cis	Stomach	GTEx
rs172366	HIBCH	cis	Thyroid	GTEx
rs172366	INPP1	Cis_1M	lymphoblastoid	RTeQTL
rs172366	HIBCH	Cis_1M	lymphoblastoid	RTeQTL
rs172366	HIBCH	cis	lung	GTEx

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:191186000-191194600	Weak transcription	K562	blood

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