Variant report

Variant	rs17238539
Chromosome Location	chr2:210377136-210377137
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:210352493..210354448-chr2:210377113..210379529,2	K562	blood:
2	chr2:210372196..210374156-chr2:210376464..210379426,2	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10514642	1.00[CEU][hapmap]
rs10514643	1.00[CEU][hapmap];0.88[YRI][hapmap]
rs11896384	1.00[CEU][hapmap]
rs12986617	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs12990915	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs12992468	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs12993084	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs12993506	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs12993627	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs12995238	1.00[CEU][hapmap];0.87[YRI][hapmap]
rs12995429	1.00[CEU][hapmap];0.87[YRI][hapmap]
rs12997113	0.87[YRI][hapmap]
rs13000954	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs13002255	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs13014332	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs13015584	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs13022394	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs13022724	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs13023473	1.00[CEU][hapmap];0.87[YRI][hapmap]
rs13025539	1.00[CEU][hapmap];0.87[YRI][hapmap]
rs13027122	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs13027280	0.87[YRI][hapmap]
rs13027599	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs16842909	1.00[CEU][hapmap]
rs16842929	1.00[CEU][hapmap]
rs16842934	1.00[CEU][hapmap]
rs17236751	1.00[CEU][hapmap];0.83[YRI][hapmap]
rs17237719	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs17237893	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs17238784	1.00[CEU][hapmap]
rs17308504	1.00[CEU][hapmap]
rs17316862	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs17316904	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs17316974	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs17317100	1.00[CEU][hapmap]
rs17317170	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs288063	1.00[CEU][hapmap]
rs6756379	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834519	chr2:210271017-210400153	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210363600-210378400	Weak transcription	Brain Germinal Matrix	brain
2	chr2:210364600-210387600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr2:210364600-210392200	Weak transcription	Pancreas	Pancrea
4	chr2:210366600-210387800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr2:210369800-210377400	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr2:210371400-210391000	Weak transcription	Aorta	Aorta
7	chr2:210371800-210377400	Weak transcription	Fetal Brain Female	brain
8	chr2:210372800-210381000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr2:210373000-210380000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr2:210376400-210377600	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr2:210377000-210377400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links