Variant report

Variant	rs17244778
Chromosome Location	chr5:74638305-74638306
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:74631860..74634058-chr5:74635733..74638438,3	K562	blood:
2	chr5:74632279..74635542-chr5:74636579..74638658,4	K562	blood:
3	chr5:74631743..74634413-chr5:74635532..74638842,4	MCF-7	breast:
4	chr5:74634550..74639803-chr5:74643156..74647439,6	MCF-7	breast:
5	chr5:74635529..74638325-chr5:74638352..74640818,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000247372	Chromatin interaction
ENSG00000113161	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17238344	1.00[ASW][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17238351	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17238358	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17238393	1.00[ASW][hapmap];0.85[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17244771	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17244827	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17244876	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs5744538	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs5744622	1.00[AMR][1000 genomes]
rs6805	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74632200-74638400	Active TSS	Fetal Adrenal Gland	Adrenal Gland
2	chr5:74633800-74638400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr5:74633800-74645800	Weak transcription	Gastric	stomach
4	chr5:74633800-74645800	Weak transcription	Spleen	Spleen
5	chr5:74633800-74650400	Weak transcription	Pancreas	Pancrea
6	chr5:74634000-74638800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr5:74634000-74640400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr5:74634000-74640400	Weak transcription	Left Ventricle	heart
9	chr5:74634200-74639200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr5:74634200-74641200	Weak transcription	Fetal Muscle Trunk	muscle
11	chr5:74634200-74641400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr5:74634400-74640400	Weak transcription	Lung	lung
13	chr5:74634400-74640400	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr5:74634400-74645400	Weak transcription	Psoas Muscle	Psoas
15	chr5:74634400-74645600	Weak transcription	Esophagus	oesophagus
16	chr5:74634400-74650800	Weak transcription	Aorta	Aorta
17	chr5:74634400-74652400	Weak transcription	Right Ventricle	heart
18	chr5:74634600-74639400	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr5:74634600-74640000	Weak transcription	Colonic Mucosa	Colon
20	chr5:74634600-74640000	Weak transcription	Colon Smooth Muscle	Colon
21	chr5:74634600-74640800	Weak transcription	Stomach Smooth Muscle	stomach
22	chr5:74634600-74642200	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr5:74634600-74644200	Weak transcription	Rectal Smooth Muscle	rectum
24	chr5:74634800-74639600	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr5:74634800-74639600	Weak transcription	Osteobl	bone
26	chr5:74634800-74641200	Weak transcription	Brain Hippocampus Middle	brain
27	chr5:74634800-74641400	Weak transcription	Primary T cells from cord blood	blood
28	chr5:74634800-74641400	Weak transcription	Adipose Nuclei	Adipose
29	chr5:74634800-74641800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr5:74635000-74638400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr5:74635000-74638400	Weak transcription	Fetal Stomach	stomach
32	chr5:74635000-74638800	Weak transcription	Fetal Intestine Small	intestine
33	chr5:74635000-74639200	Enhancers	Muscle Satellite Cultured Cells	--
34	chr5:74635000-74639400	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr5:74635000-74639600	Weak transcription	Primary T cells fromperipheralblood	blood
36	chr5:74635000-74639800	Weak transcription	Primary B cells from peripheral blood	blood
37	chr5:74635000-74640400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr5:74635000-74640400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr5:74635000-74640400	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr5:74635000-74640400	Weak transcription	Placenta Amnion	Placenta Amnion
41	chr5:74635000-74640400	Weak transcription	Thymus	Thymus
42	chr5:74635000-74641200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
43	chr5:74635000-74641200	Weak transcription	Brain Anterior Caudate	brain
44	chr5:74635000-74641200	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr5:74635000-74641400	Weak transcription	Brain Cingulate Gyrus	brain
46	chr5:74635000-74641400	Weak transcription	Brain Substantia Nigra	brain
47	chr5:74635000-74641400	Weak transcription	Fetal Muscle Leg	muscle
48	chr5:74635000-74641600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
49	chr5:74635000-74641800	Weak transcription	Primary hematopoietic stem cells	blood
50	chr5:74635000-74643000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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