Variant report

Variant	rs1724492
Chromosome Location	chr7:146134001-146134002
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 106 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs1358077	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1405170	0.88[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1405171	0.93[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1526153	0.88[YRI][hapmap]
rs1526155	0.93[YRI][hapmap]
rs1526160	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1612120	1.00[YRI][hapmap]
rs1614837	1.00[YRI][hapmap]
rs1614899	0.94[YRI][hapmap]
rs1626345	0.88[YRI][hapmap]
rs1631820	1.00[EUR][1000 genomes]
rs1639436	0.93[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1639439	0.93[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1639441	0.93[YRI][hapmap]
rs1639442	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1639444	0.94[YRI][hapmap]
rs1639457	0.85[YRI][hapmap]
rs1639459	0.92[YRI][hapmap]
rs1639461	0.85[YRI][hapmap]
rs1639462	0.85[YRI][hapmap]
rs1639463	0.88[YRI][hapmap]
rs1639497	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1639498	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1639499	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1639500	0.88[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1639502	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1639503	0.94[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1639508	0.93[YRI][hapmap]
rs1718072	1.00[EUR][1000 genomes]
rs1718085	0.88[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1718087	0.93[YRI][hapmap]
rs1718089	0.94[YRI][hapmap]
rs1718090	0.94[YRI][hapmap]
rs1718094	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1718095	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1718098	0.82[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1724477	0.88[YRI][hapmap]
rs1724480	0.88[YRI][hapmap]
rs1724486	1.00[YRI][hapmap]
rs1724487	0.94[YRI][hapmap]
rs1724488	1.00[YRI][hapmap]
rs1724489	0.94[YRI][hapmap]
rs1724491	0.88[YRI][hapmap]
rs1724493	0.93[YRI][hapmap]
rs1724499	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1724501	0.92[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1724502	0.93[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1724503	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1724504	1.00[EUR][1000 genomes]
rs1724505	1.00[EUR][1000 genomes]
rs1724514	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1724518	0.85[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1724519	0.88[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1724520	0.86[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1724521	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1724522	0.88[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1724523	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1724524	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2535751	0.88[YRI][hapmap]
rs2693421	0.93[YRI][hapmap]
rs6947836	1.00[EUR][1000 genomes]
rs6969042	1.00[EUR][1000 genomes]
rs7804084	1.00[EUR][1000 genomes]
rs802193	1.00[EUR][1000 genomes]
rs802197	1.00[EUR][1000 genomes]
rs802199	1.00[EUR][1000 genomes]
rs802201	0.82[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs802202	0.81[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs802204	0.84[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs940958	0.82[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs940959	0.93[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs940960	0.88[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs940961	0.85[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs940962	0.82[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs940963	0.88[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:31 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889384	chr7:145541783-146239545	Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1020950	chr7:145683419-146264304	Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv889387	chr7:145903862-146239545	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv533345	chr7:145934546-146134958	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv917027	chr7:146069317-146194011	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv1024679	chr7:146091479-146248268	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1017138	chr7:146102286-146318562	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv889390	chr7:146111034-146239545	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv5994	chr7:146131977-146151284	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv2522287	chr7:146133141-146140099	Enhancers	n/a	n/a	inside rSNPs	diseases
11	esv2028241	chr7:146133600-146139699	Enhancers	n/a	n/a	inside rSNPs	diseases
12	esv2491993	chr7:146133606-146139851	Enhancers	n/a	n/a	inside rSNPs	diseases
13	esv3476916	chr7:146133623-146139637	Enhancers	n/a	n/a	inside rSNPs	diseases
14	esv3476914	chr7:146133677-146139605	Enhancers	n/a	n/a	inside rSNPs	diseases
15	esv3476917	chr7:146133688-146139598	Enhancers	n/a	n/a	inside rSNPs	diseases
16	esv3476915	chr7:146133708-146139560	Enhancers	n/a	n/a	inside rSNPs	diseases
17	esv12522	chr7:146133751-146139658	Enhancers	n/a	n/a	inside rSNPs	diseases
18	esv3476918	chr7:146133766-146139530	Enhancers	n/a	n/a	inside rSNPs	diseases
19	nsv514456	chr7:146133851-146139403	Enhancers	n/a	n/a	inside rSNPs	diseases
20	esv1808742	chr7:146133867-146139908	Enhancers	n/a	n/a	inside rSNPs	diseases
21	esv1812009	chr7:146133867-146139908	Enhancers	n/a	n/a	inside rSNPs	diseases
22	esv2421508	chr7:146133867-146139908	Enhancers	n/a	n/a	inside rSNPs	diseases
23	nsv442075	chr7:146133867-146139908	Enhancers	n/a	n/a	inside rSNPs	diseases
24	esv1809542	chr7:146133926-146138085	Enhancers	n/a	n/a	inside rSNPs	diseases
25	esv1811338	chr7:146133926-146138085	Enhancers	n/a	n/a	inside rSNPs	diseases
26	esv1811557	chr7:146133926-146138085	Enhancers	n/a	n/a	inside rSNPs	diseases
27	esv1813044	chr7:146133926-146138085	Enhancers	n/a	n/a	inside rSNPs	diseases
28	esv1809662	chr7:146133926-146138550	Enhancers	n/a	n/a	inside rSNPs	diseases
29	esv1804899	chr7:146133926-146139175	Enhancers	n/a	n/a	inside rSNPs	diseases
30	esv1810858	chr7:146133926-146139175	Enhancers	n/a	n/a	inside rSNPs	diseases
31	esv1814926	chr7:146133926-146139175	Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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