Variant report

Variant	rs1724604
Chromosome Location	chr15:52819265-52819266
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:52806204..52808038-chr15:52817695..52819356,2	MCF-7	breast:
2	chr15:52718660..52721440-chr15:52817990..52820866,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs1724609	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471245	chr15:52607262-53187165	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	nsv1041421	chr15:52661342-53148286	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
3	esv1832020	chr15:52702400-52901914	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:52796800-52819400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr15:52796800-52820000	Weak transcription	Primary T cells from cord blood	blood
3	chr15:52797600-52819800	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr15:52807400-52820200	Weak transcription	Lung	lung
5	chr15:52807800-52819800	Weak transcription	Rectal Smooth Muscle	rectum
6	chr15:52811600-52819400	Weak transcription	Primary B cells from cord blood	blood
7	chr15:52812400-52819600	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr15:52812600-52820200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr15:52812800-52819800	Weak transcription	Colon Smooth Muscle	Colon
10	chr15:52812800-52819800	Weak transcription	HSMMtube	muscle
11	chr15:52812800-52820200	Weak transcription	Left Ventricle	heart
12	chr15:52812800-52820200	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr15:52812800-52820200	Weak transcription	Small Intestine	intestine
14	chr15:52813000-52819400	Weak transcription	Fetal Heart	heart
15	chr15:52813000-52819600	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr15:52813000-52819600	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr15:52813800-52819600	Weak transcription	GM12878-XiMat	blood
18	chr15:52813800-52819800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr15:52814400-52819600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr15:52814800-52819400	Weak transcription	Primary neutrophils fromperipheralblood	blood
21	chr15:52815600-52820000	Weak transcription	Right Atrium	heart
22	chr15:52815800-52820000	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr15:52816000-52819800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr15:52816000-52819800	Weak transcription	Brain Substantia Nigra	brain
25	chr15:52816000-52820000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr15:52816000-52820000	Weak transcription	HSMM	muscle
27	chr15:52816200-52819400	Weak transcription	Brain Cingulate Gyrus	brain
28	chr15:52816200-52819400	Weak transcription	A549	lung
29	chr15:52816200-52819600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr15:52816200-52819600	Weak transcription	Adipose Nuclei	Adipose
31	chr15:52816200-52819600	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr15:52816200-52819800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr15:52816200-52819800	Weak transcription	NH-A	brain
34	chr15:52816200-52820000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr15:52816200-52820000	Weak transcription	Osteobl	bone
36	chr15:52816400-52819400	Weak transcription	NHDF-Ad	bronchial
37	chr15:52816400-52819800	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr15:52816400-52819800	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr15:52816400-52819800	Weak transcription	NHLF	lung
40	chr15:52816800-52819600	Weak transcription	Primary monocytes fromperipheralblood	blood
41	chr15:52816800-52819600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr15:52816800-52819800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr15:52817000-52819800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr15:52817000-52819800	Weak transcription	Psoas Muscle	Psoas
45	chr15:52817800-52819400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
46	chr15:52818200-52819400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
47	chr15:52818200-52819400	Weak transcription	Brain Hippocampus Middle	brain
48	chr15:52818200-52819600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
49	chr15:52818200-52819600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
50	chr15:52818200-52819600	Weak transcription	HMEC	breast

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