Variant report

Variant	rs17247719
Chromosome Location	chr4:91742178-91742179
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12507217	0.88[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1454329	0.82[CHB][hapmap]
rs17185435	0.82[CHB][hapmap];0.85[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs17185519	0.82[CHB][hapmap];0.93[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs17187179	0.94[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap]
rs17188168	1.00[YRI][hapmap];0.82[EUR][1000 genomes]
rs17188252	1.00[YRI][hapmap];0.81[EUR][1000 genomes]
rs17245345	0.81[CHB][hapmap];0.93[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs17246676	0.93[CHB][hapmap];0.83[JPT][hapmap];1.00[YRI][hapmap]
rs3796673	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6833272	0.94[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs723781	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs723782	0.83[CHB][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs749653	0.83[CHB][hapmap];0.93[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs7683055	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931074	chr4:90970476-91753697	Enhancers Strong transcription Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv534470	chr4:91342219-91842807	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv428766	chr4:91618397-91768647	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv879553	chr4:91691313-91868576	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:91735400-91745800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr4:91735600-91754200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr4:91736400-91753600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr4:91738600-91744000	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr4:91738600-91744200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr4:91738600-91745200	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr4:91738600-91745200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr4:91740000-91744600	Weak transcription	Pancreas	Pancrea

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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