The 2.0 version of rSNPBase

Variant report

Variant rs17254379
Chromosome Location chr13:75936636-75936637
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:65 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr13:75881800-75940000 Weak transcription H9 Cell Line embryonic stem cell
2 chr13:75902600-75947000 Weak transcription Primary hematopoietic stem cells blood
3 chr13:75905400-75940000 Weak transcription Small Intestine intestine
4 chr13:75910000-75937600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
5 chr13:75910200-75939400 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
6 chr13:75910800-75947600 Weak transcription H1 Cell Line embryonic stem cell
7 chr13:75912000-75940800 Weak transcription Duodenum Smooth Muscle Duodenum
8 chr13:75916200-75938200 Weak transcription Esophagus oesophagus
9 chr13:75923600-75940200 Weak transcription Liver Liver
10 chr13:75928000-75941800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
11 chr13:75928400-75939400 Weak transcription iPS-15b Cell Line embryonic stem cell
12 chr13:75928600-75940200 Weak transcription Rectal Mucosa Donor 29 rectum
13 chr13:75928800-75939000 Weak transcription Pancreatic Islets Pancreatic Islet
14 chr13:75929000-75937600 Weak transcription Psoas Muscle Psoas
15 chr13:75929400-75939600 Weak transcription Hela-S3 cervix
16 chr13:75929600-75947600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
17 chr13:75929800-75939800 Weak transcription Primary hematopoietic stem cells short term culture blood
18 chr13:75930400-75939400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
19 chr13:75930600-75939600 Weak transcription Adipose Nuclei Adipose
20 chr13:75932400-75937600 Weak transcription Pancreas Pancrea
21 chr13:75932400-75944400 Weak transcription Spleen Spleen
22 chr13:75932600-75937200 Weak transcription GM12878-XiMat blood
23 chr13:75933000-75943000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
24 chr13:75933400-75938200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
25 chr13:75933400-75940200 Weak transcription A549 lung
26 chr13:75933600-75937200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
27 chr13:75933600-75939200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
28 chr13:75933800-75938600 Weak transcription NHLF lung
29 chr13:75934000-75937000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
30 chr13:75934000-75937000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
31 chr13:75934000-75937000 Weak transcription HMEC breast
32 chr13:75934000-75938400 Weak transcription Muscle Satellite Cultured Cells --
33 chr13:75934200-75939400 Weak transcription HSMMtube muscle
34 chr13:75934600-75939200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
35 chr13:75934600-75939200 Weak transcription HSMM muscle
36 chr13:75934600-75939800 Weak transcription Rectal Smooth Muscle rectum
37 chr13:75934800-75936800 Strong transcription HUVEC blood vessel
38 chr13:75934800-75939200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
39 chr13:75934800-75940000 Weak transcription ES-I3 Cell Line embryonic stem cell
40 chr13:75934800-75947200 Weak transcription HUES48 Cell Line embryonic stem cell
41 chr13:75935000-75937400 Weak transcription NH-A brain
42 chr13:75935000-75937600 Weak transcription iPS-20b Cell Line embryonic stem cell
43 chr13:75935000-75939400 Weak transcription NHDF-Ad bronchial
44 chr13:75935200-75937000 Weak transcription Osteobl bone
45 chr13:75936000-75936800 Genic enhancers Right Ventricle heart
46 chr13:75936000-75937000 Enhancers Fetal Heart heart
47 chr13:75936000-75937200 Strong transcription HepG2 liver
48 chr13:75936600-75936800 Weak transcription Sigmoid Colon Sigmoid Colon
49 chr13:75936600-75937000 Weak transcription Skeletal Muscle Female skeletal muscle
50 chr13:75936600-75937200 Weak transcription Breast Myoepithelial Primary Cells Breast

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Last update: Aug 31, 2015