Variant report

Variant	rs17257773
Chromosome Location	chr14:25511084-25511085
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:25275348..25276037-chr14:25510991..25511724,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10483293	0.89[ASN][1000 genomes]
rs12147239	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12432656	1.00[CEU][hapmap];0.90[CHB][hapmap];0.94[CHD][hapmap];0.85[EUR][1000 genomes]
rs17257661	0.87[CEU][hapmap]
rs17257829	0.86[ASN][1000 genomes]
rs72682974	0.85[EUR][1000 genomes]
rs72682975	0.83[EUR][1000 genomes]
rs72682980	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72682982	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv901504	chr14:25184210-25646203	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv901509	chr14:25398571-25743484	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv901510	chr14:25476170-25526309	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
6	nsv901511	chr14:25505085-25588029	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:25492400-25517600	Weak transcription	Psoas Muscle	Psoas
2	chr14:25497200-25515200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr14:25503800-25515800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr14:25506600-25511400	Weak transcription	Right Atrium	heart
5	chr14:25506800-25511200	Weak transcription	Brain Angular Gyrus	brain
6	chr14:25507000-25511200	Weak transcription	Colon Smooth Muscle	Colon
7	chr14:25507000-25511400	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr14:25507000-25512000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr14:25507200-25511400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr14:25507600-25511600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr14:25508600-25512200	Enhancers	Stomach Mucosa	stomach
12	chr14:25508800-25511200	Weak transcription	Brain Cingulate Gyrus	brain
13	chr14:25508800-25511600	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr14:25509000-25511400	Weak transcription	Brain Anterior Caudate	brain
15	chr14:25509000-25513600	Weak transcription	Lung	lung
16	chr14:25509400-25511800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr14:25509400-25513000	Weak transcription	Fetal Muscle Trunk	muscle
18	chr14:25510000-25515800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr14:25510400-25511400	Enhancers	Fetal Intestine Small	intestine
20	chr14:25510400-25512000	Enhancers	Fetal Intestine Large	intestine
21	chr14:25510600-25512600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr14:25510600-25512600	Enhancers	HepG2	liver
23	chr14:25510800-25511200	Flanking Active TSS	Duodenum Mucosa	Duodenum
24	chr14:25510800-25511600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
25	chr14:25510800-25511800	Enhancers	Sigmoid Colon	Sigmoid Colon
26	chr14:25510800-25511800	Strong transcription	HSMM	muscle
27	chr14:25510800-25512000	Enhancers	Pancreas	Pancrea
28	chr14:25510800-25512000	Enhancers	Placenta Amnion	Placenta Amnion
29	chr14:25510800-25512000	Enhancers	Right Ventricle	heart
30	chr14:25510800-25512200	Enhancers	Liver	Liver
31	chr14:25510800-25512200	Enhancers	Left Ventricle	heart
32	chr14:25510800-25514200	Enhancers	Brain Hippocampus Middle	brain
33	chr14:25510800-25514400	Enhancers	Brain Substantia Nigra	brain
34	chr14:25511000-25511200	Enhancers	H9 Cell Line	embryonic stem cell
35	chr14:25511000-25511200	Enhancers	iPS-15b Cell Line	embryonic stem cell
36	chr14:25511000-25511200	Enhancers	Fetal Heart	heart
37	chr14:25511000-25511200	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
38	chr14:25511000-25511200	Enhancers	Stomach Smooth Muscle	stomach
39	chr14:25511000-25511800	Enhancers	Gastric	stomach
40	chr14:25511000-25512400	Enhancers	Pancreatic Islets	Pancreatic Islet
41	chr14:25511000-25512600	Enhancers	HUES48 Cell Line	embryonic stem cell
42	chr14:25511000-25513800	Enhancers	Small Intestine	intestine
43	chr14:25511000-25514200	Genic enhancers	Fetal Lung	lung
44	chr14:25511000-25517400	Weak transcription	HSMMtube	muscle

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