Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10161842	0.91[EUR][1000 genomes]
rs12584617	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12585223	0.84[ASN][1000 genomes]
rs35342931	0.88[EUR][1000 genomes]
rs4537893	0.90[EUR][1000 genomes]
rs71439904	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71446880	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9317188	0.91[EUR][1000 genomes]
rs9539158	0.88[CEU][hapmap]
rs9592112	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9592113	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9592118	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9598275	0.87[EUR][1000 genomes]
rs9598276	0.88[EUR][1000 genomes]
rs9598277	0.86[EUR][1000 genomes]
rs9598283	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9598284	0.91[EUR][1000 genomes]
rs9598285	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9598286	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9598287	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9598292	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948661	chr13:61906251-62179649	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv2761266	chr13:61928642-62690828	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv832628	chr13:61985540-62153692	Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv948810	chr13:62003256-62968196	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1054037	chr13:62058336-62094775	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1068	chr13:62063178-62108404	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:62065600-62071600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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