Variant report

Variant	rs17258240
Chromosome Location	chr14:85113566-85113567
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11159665	0.81[AMR][1000 genomes]
rs11159666	0.86[AMR][1000 genomes]
rs11159669	0.86[AMR][1000 genomes]
rs12147215	0.91[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12147671	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12587920	0.86[AMR][1000 genomes]
rs12587994	0.86[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs12588498	0.86[AMR][1000 genomes]
rs12590330	0.86[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs12590377	0.91[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1375452	0.86[AMR][1000 genomes]
rs1383779	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1481406	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs17185981	0.86[AMR][1000 genomes]
rs17185995	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs17186016	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs17258143	0.86[AMR][1000 genomes]
rs17258150	0.86[AMR][1000 genomes]
rs17258171	0.86[AMR][1000 genomes]
rs17258192	0.86[AMR][1000 genomes]
rs17258213	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2199995	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2199996	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2372779	0.86[AMR][1000 genomes]
rs2372780	0.84[AMR][1000 genomes]
rs2372781	0.86[AMR][1000 genomes]
rs56095979	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs56215629	0.91[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs57943990	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs61332524	0.86[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7140320	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7141196	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7158265	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7160661	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs72694469	0.86[AMR][1000 genomes]
rs8017812	0.86[AMR][1000 genomes]
rs8019264	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751288	chr14:84815330-85704047	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1046875	chr14:84993510-85193250	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv902162	chr14:85048957-85131164	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv565378	chr14:85070611-85140984	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv1829021	chr14:85106009-85196163	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:85113000-85113800	Enhancers	NH-A	brain

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