Variant report

Variant	rs17258325
Chromosome Location	chr4:106359580-106359581
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:106354505..106356788-chr4:106358745..106361316,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs17035775	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461609	chr4:105869548-106366209	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv470063	chr4:105869548-106366209	Transcr. at gene 5' and 3' Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv595007	chr4:105869548-106366209	Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
4	nsv879699	chr4:106212562-106698892	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
5	nsv830027	chr4:106222010-106406738	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
6	nsv1002228	chr4:106346206-106433381	ZNF genes & repeats Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
7	esv2760858	chr4:106351454-106376197	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106321400-106367200	Weak transcription	HUVEC	blood vessel
2	chr4:106323600-106372800	Weak transcription	Stomach Mucosa	stomach
3	chr4:106326000-106363200	Weak transcription	Colon Smooth Muscle	Colon
4	chr4:106327200-106365200	Weak transcription	Osteobl	bone
5	chr4:106327200-106389200	Weak transcription	Small Intestine	intestine
6	chr4:106327200-106390600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr4:106336800-106376400	Weak transcription	Right Ventricle	heart
8	chr4:106336800-106387800	Weak transcription	NHLF	lung
9	chr4:106340200-106387800	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr4:106341600-106376000	Weak transcription	Fetal Heart	heart
11	chr4:106343200-106363000	Weak transcription	Psoas Muscle	Psoas
12	chr4:106344000-106363800	Weak transcription	HepG2	liver
13	chr4:106346600-106369000	Weak transcription	Hela-S3	cervix
14	chr4:106347200-106366000	Weak transcription	NHDF-Ad	bronchial
15	chr4:106347600-106367600	Weak transcription	Fetal Brain Male	brain
16	chr4:106347600-106392800	Weak transcription	Colonic Mucosa	Colon
17	chr4:106347800-106362800	Weak transcription	Spleen	Spleen
18	chr4:106347800-106375200	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr4:106348000-106366000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr4:106348000-106375000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr4:106348000-106376400	Weak transcription	Gastric	stomach
22	chr4:106348000-106376800	Weak transcription	Pancreas	Pancrea
23	chr4:106348000-106388000	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr4:106348200-106363800	Weak transcription	Aorta	Aorta
25	chr4:106348200-106364400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr4:106348200-106387800	Weak transcription	Lung	lung
27	chr4:106348200-106393000	Weak transcription	Thymus	Thymus
28	chr4:106348400-106384200	Weak transcription	Fetal Stomach	stomach
29	chr4:106348600-106384600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr4:106348800-106375000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr4:106349800-106360200	Strong transcription	Primary monocytes fromperipheralblood	blood
32	chr4:106351600-106359600	Strong transcription	HUES64 Cell Line	embryonic stem cell
33	chr4:106351600-106359600	Strong transcription	Liver	Liver
34	chr4:106352000-106359600	Strong transcription	Rectal Mucosa Donor 29	rectum
35	chr4:106352200-106375000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr4:106352800-106359600	Strong transcription	Primary B cells from peripheral blood	blood
37	chr4:106352800-106359800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr4:106353800-106359600	Strong transcription	Fetal Thymus	thymus
39	chr4:106354200-106359800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
40	chr4:106354200-106359800	Strong transcription	Duodenum Smooth Muscle	Duodenum
41	chr4:106354200-106360200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr4:106354400-106359800	Strong transcription	Primary T helper cells PMA-I stimulated	--
43	chr4:106354400-106360600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr4:106354400-106360800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
45	chr4:106354600-106359600	Strong transcription	Ovary	ovary
46	chr4:106354800-106359600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr4:106354800-106360000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
48	chr4:106355200-106359800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr4:106355400-106378800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr4:106355400-106393200	Weak transcription	Esophagus	oesophagus

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