Variant report

Variant rs17258425
Chromosome Location chr1:120286863-120286864
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:97 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:120257200-120287000 Weak transcription NH-A brain
2 chr1:120258600-120289200 Weak transcription ES-WA7 Cell Line embryonic stem cell
3 chr1:120260400-120287600 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
4 chr1:120261000-120287200 Strong transcription Hela-S3 cervix
5 chr1:120261600-120288200 Strong transcription HUES48 Cell Line embryonic stem cell
6 chr1:120261800-120287000 Strong transcription HUES6 Cell Line embryonic stem cell
7 chr1:120261800-120287600 Strong transcription iPS-18 Cell Line embryonic stem cell
8 chr1:120262000-120287200 Strong transcription Primary hematopoietic stem cells short term culture blood
9 chr1:120262000-120287400 Strong transcription HUES64 Cell Line embryonic stem cell
10 chr1:120262000-120287400 Strong transcription iPS-20b Cell Line embryonic stem cell
11 chr1:120262000-120287800 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
12 chr1:120262000-120288200 Strong transcription H1 Cell Line embryonic stem cell
13 chr1:120262400-120287400 Strong transcription Dnd41 blood
14 chr1:120262400-120288200 Strong transcription ES-UCSF4 Cell Line embryonic stem cell
15 chr1:120263400-120287400 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
16 chr1:120263400-120291400 Weak transcription Sigmoid Colon Sigmoid Colon
17 chr1:120278600-120287000 Weak transcription Primary T helper naive cells fromperipheralblood blood
18 chr1:120279200-120290600 Weak transcription Primary monocytes fromperipheralblood blood
19 chr1:120280400-120289400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
20 chr1:120280800-120287000 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
21 chr1:120281200-120287000 Weak transcription K562 blood
22 chr1:120282000-120293400 Weak transcription Aorta Aorta
23 chr1:120282400-120287400 Strong transcription iPS DF 6.9 Cell Line embryonic stem cell
24 chr1:120282800-120287600 Genic enhancers Breast Myoepithelial Primary Cells Breast
25 chr1:120283600-120288600 Weak transcription ES-I3 Cell Line embryonic stem cell
26 chr1:120283800-120287200 Genic enhancers IMR90 fetal lung fibroblasts Cell Line lung
27 chr1:120284000-120288000 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
28 chr1:120284200-120287400 Enhancers Colon Smooth Muscle Colon
29 chr1:120284400-120287200 Genic enhancers Fetal Muscle Leg muscle
30 chr1:120284400-120287800 Genic enhancers Fetal Muscle Trunk muscle
31 chr1:120284600-120287000 Genic enhancers Fetal Stomach stomach
32 chr1:120284600-120287200 Enhancers Brain Angular Gyrus brain
33 chr1:120284600-120287200 Enhancers Brain Dorsolateral Prefrontal Cortex brain
34 chr1:120284800-120287000 Genic enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
35 chr1:120285200-120287000 Enhancers Left Ventricle heart
36 chr1:120285200-120287200 Enhancers Right Atrium heart
37 chr1:120285200-120287400 Genic enhancers Fetal Intestine Large intestine
38 chr1:120285200-120287800 Genic enhancers Fetal Intestine Small intestine
39 chr1:120285400-120287200 Enhancers Fetal Heart heart
40 chr1:120285400-120287200 Strong transcription NHEK skin
41 chr1:120285400-120287600 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
42 chr1:120285400-120288800 Weak transcription HSMM muscle
43 chr1:120285600-120287200 Strong transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
44 chr1:120285600-120287200 Enhancers Brain Cingulate Gyrus brain
45 chr1:120285600-120287200 Enhancers Brain Germinal Matrix brain
46 chr1:120285600-120287400 Enhancers Brain Anterior Caudate brain
47 chr1:120285600-120292200 Weak transcription Lung lung
48 chr1:120285800-120287000 Enhancers Stomach Mucosa stomach
49 chr1:120285800-120289400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
50 chr1:120285800-120289600 Weak transcription Ovary ovary

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