Variant report

Variant	rs17266699
Chromosome Location	chr5:44482345-44482346
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10079194	0.85[EUR][1000 genomes]
rs17318672	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17320917	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830277	chr5:44383402-44566881	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1024923	chr5:44439853-44528314	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv3425269	chr5:44461244-44487601	Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:44479800-44491800	Weak transcription	Fetal Lung	lung
2	chr5:44480200-44482800	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr5:44480600-44482800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr5:44481600-44482800	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr5:44481600-44483000	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr5:44481600-44483200	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr5:44481600-44483200	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr5:44481800-44483400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr5:44482000-44483600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr5:44482200-44482600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
11	chr5:44482200-44483400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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