Variant report

Variant	rs17268130
Chromosome Location	chr2:54172496-54172497
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:54161004..54163781-chr2:54171778..54174674,2	K562	blood:
2	chr2:54162281..54164270-chr2:54171778..54174440,2	K562	blood:
3	chr2:54169796..54173175-chr2:54173892..54178351,4	K562	blood:

Variant related genes	Relation type
ENSG00000068878	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17189589	0.94[CEU][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17522496	0.94[CEU][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap]
rs72799245	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72800722	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:54087200-54176000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr2:54087600-54187600	Weak transcription	Stomach Mucosa	stomach
3	chr2:54108200-54177400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr2:54109800-54179800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr2:54122200-54172800	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr2:54139200-54176600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
7	chr2:54139200-54177000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr2:54139400-54176200	Strong transcription	HUES64 Cell Line	embryonic stem cell
9	chr2:54139600-54177000	Strong transcription	HUES6 Cell Line	embryonic stem cell
10	chr2:54143000-54177600	Strong transcription	HepG2	liver
11	chr2:54143400-54176200	Strong transcription	HMEC	breast
12	chr2:54149800-54177000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr2:54151000-54189800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr2:54153200-54179800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr2:54153400-54194600	Weak transcription	Fetal Brain Male	brain
16	chr2:54156600-54188000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr2:54156600-54190000	Weak transcription	Spleen	Spleen
18	chr2:54158600-54173600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr2:54159200-54173200	Weak transcription	Gastric	stomach
20	chr2:54159200-54177000	Weak transcription	Pancreas	Pancrea
21	chr2:54159200-54177200	Weak transcription	Right Ventricle	heart
22	chr2:54159200-54188000	Weak transcription	Colonic Mucosa	Colon
23	chr2:54159200-54188000	Weak transcription	Esophagus	oesophagus
24	chr2:54159200-54188200	Weak transcription	Small Intestine	intestine
25	chr2:54159200-54189400	Weak transcription	Aorta	Aorta
26	chr2:54159200-54189800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr2:54159400-54195800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr2:54160000-54173600	Weak transcription	Placenta Amnion	Placenta Amnion
29	chr2:54160800-54173600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr2:54160800-54173600	Weak transcription	Fetal Intestine Small	intestine
31	chr2:54160800-54173800	Weak transcription	Thymus	Thymus
32	chr2:54160800-54177200	Weak transcription	Lung	lung
33	chr2:54160800-54179400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr2:54161600-54189800	Weak transcription	Ovary	ovary
35	chr2:54162000-54173200	Weak transcription	Psoas Muscle	Psoas
36	chr2:54162800-54173200	Weak transcription	H9 Cell Line	embryonic stem cell
37	chr2:54162800-54173400	Weak transcription	Stomach Smooth Muscle	stomach
38	chr2:54163400-54173600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr2:54163400-54174000	Weak transcription	Fetal Kidney	kidney
40	chr2:54163600-54173200	Weak transcription	NHLF	lung
41	chr2:54163600-54180400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
42	chr2:54164000-54173600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr2:54164000-54176400	Weak transcription	Fetal Brain Female	brain
44	chr2:54164200-54177000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
45	chr2:54164400-54173600	Weak transcription	Brain Germinal Matrix	brain
46	chr2:54164600-54173800	Weak transcription	Primary neutrophils fromperipheralblood	blood
47	chr2:54164800-54176600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
48	chr2:54165000-54172600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
49	chr2:54165600-54173000	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr2:54165600-54173400	Weak transcription	Duodenum Smooth Muscle	Duodenum

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