Variant report

Variant	rs17271888
Chromosome Location	chr5:68506323-68506324
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:68470012..68472912-chr5:68504302..68507099,2	K562	blood:

Variant related genes	Relation type
ENSG00000134057	Chromatin interaction
ENSG00000238334	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs17236331	1.00[ASN][1000 genomes]
rs61730508	1.00[ASN][1000 genomes]
rs62356860	1.00[ASN][1000 genomes]
rs62371185	1.00[ASN][1000 genomes]
rs62371187	1.00[ASN][1000 genomes]
rs62371222	1.00[ASN][1000 genomes]
rs62371224	1.00[ASN][1000 genomes]
rs62371695	1.00[ASN][1000 genomes]
rs62373160	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018151	chr5:68377118-68667581	Enhancers Active TSS Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv1035004	chr5:68405526-68670101	Strong transcription Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	esv3378789	chr5:68438275-68540725	Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17271888	MRPS36	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:68486000-68513600	Weak transcription	Gastric	stomach
2	chr5:68486200-68509400	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr5:68486200-68509400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr5:68486200-68509400	Weak transcription	HSMM	muscle
5	chr5:68486200-68512800	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr5:68486400-68512400	Weak transcription	Primary B cells from cord blood	blood
7	chr5:68486400-68512600	Weak transcription	Duodenum Mucosa	Duodenum
8	chr5:68486400-68513000	Weak transcription	Brain Germinal Matrix	brain
9	chr5:68486400-68513000	Weak transcription	Fetal Intestine Large	intestine
10	chr5:68486400-68513000	Weak transcription	Osteobl	bone
11	chr5:68486600-68509200	Weak transcription	NHDF-Ad	bronchial
12	chr5:68487400-68508200	Strong transcription	HUES48 Cell Line	embryonic stem cell
13	chr5:68487400-68511200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr5:68487600-68508000	Strong transcription	HUES64 Cell Line	embryonic stem cell
15	chr5:68487600-68508000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr5:68487600-68508200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
17	chr5:68487600-68509000	Strong transcription	HUES6 Cell Line	embryonic stem cell
18	chr5:68488600-68507400	Weak transcription	GM12878-XiMat	blood
19	chr5:68490400-68513200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr5:68492400-68513000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr5:68492800-68512200	Weak transcription	Primary B cells from peripheral blood	blood
22	chr5:68492800-68513000	Weak transcription	Fetal Brain Female	brain
23	chr5:68494200-68509400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr5:68494600-68513200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr5:68495000-68509400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr5:68495400-68512800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr5:68495400-68513000	Weak transcription	HMEC	breast
28	chr5:68495400-68513400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr5:68495600-68509200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr5:68495600-68512400	Weak transcription	Primary T cells from cord blood	blood
31	chr5:68495600-68512600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr5:68495600-68512800	Weak transcription	Primary hematopoietic stem cells	blood
33	chr5:68495600-68513000	Weak transcription	Fetal Lung	lung
34	chr5:68495600-68513200	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr5:68495600-68513400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr5:68497200-68506400	Weak transcription	Fetal Muscle Leg	muscle
37	chr5:68497800-68506800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr5:68497800-68513200	Weak transcription	Fetal Muscle Trunk	muscle
39	chr5:68498000-68506400	Weak transcription	Fetal Thymus	thymus
40	chr5:68498000-68507400	Weak transcription	K562	blood
41	chr5:68498000-68512800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr5:68498800-68508200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr5:68498800-68509400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr5:68500200-68507400	Strong transcription	H9 Cell Line	embryonic stem cell
45	chr5:68500600-68513000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
46	chr5:68501600-68513000	Weak transcription	Thymus	Thymus
47	chr5:68502200-68509600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr5:68502800-68513600	Weak transcription	Small Intestine	intestine
49	chr5:68503000-68509200	Weak transcription	HepG2	liver
50	chr5:68503000-68509400	Weak transcription	A549	lung

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