Variant report

Variant	rs17275497
Chromosome Location	chr21:17148103-17148104
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:17102202..17104266-chr21:17147089..17149632,2	K562	blood:

Variant related genes	Relation type
ENSG00000155313	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1815433	chr21:17106192-17167353	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv834050	chr21:17146090-17348951	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:17125800-17153400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr21:17127000-17152800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr21:17127200-17153400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr21:17127400-17153400	Weak transcription	Brain Cingulate Gyrus	brain
5	chr21:17127800-17152800	Weak transcription	Fetal Intestine Large	intestine
6	chr21:17130800-17156800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr21:17132800-17153400	Weak transcription	Spleen	Spleen
8	chr21:17133800-17149400	Weak transcription	Small Intestine	intestine
9	chr21:17134000-17152400	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr21:17134000-17153400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr21:17134200-17153000	Weak transcription	Fetal Muscle Trunk	muscle
12	chr21:17134200-17153400	Weak transcription	Stomach Smooth Muscle	stomach
13	chr21:17134200-17154000	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr21:17134400-17153200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr21:17135000-17152600	Weak transcription	Primary T cells from cord blood	blood
16	chr21:17135000-17153000	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr21:17135000-17153400	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr21:17135000-17153600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr21:17135200-17153000	Weak transcription	Fetal Muscle Leg	muscle
20	chr21:17135400-17153200	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr21:17135600-17153200	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr21:17136600-17148400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr21:17136600-17153200	Weak transcription	Thymus	Thymus
24	chr21:17138600-17152800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr21:17139600-17150800	Weak transcription	Fetal Kidney	kidney
26	chr21:17139800-17149000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr21:17139800-17153000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr21:17139800-17153400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr21:17139800-17153400	Weak transcription	Aorta	Aorta
30	chr21:17140000-17149000	Weak transcription	Liver	Liver
31	chr21:17140000-17152800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr21:17140200-17150800	Weak transcription	Fetal Lung	lung
33	chr21:17140200-17153400	Weak transcription	Brain Anterior Caudate	brain
34	chr21:17140400-17152600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
35	chr21:17140600-17148200	Weak transcription	HepG2	liver
36	chr21:17140800-17148800	Weak transcription	Primary neutrophils fromperipheralblood	blood
37	chr21:17140800-17153000	Weak transcription	K562	blood
38	chr21:17140800-17153400	Weak transcription	Duodenum Mucosa	Duodenum
39	chr21:17140800-17154200	Weak transcription	Stomach Mucosa	stomach
40	chr21:17141000-17152800	Weak transcription	Primary T cells fromperipheralblood	blood
41	chr21:17142600-17148200	Weak transcription	Primary T helper cells PMA-I stimulated	--
42	chr21:17142600-17153000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
43	chr21:17142600-17153600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr21:17142600-17154000	Weak transcription	Brain Hippocampus Middle	brain
45	chr21:17142800-17152600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr21:17143200-17152800	Weak transcription	Hela-S3	cervix
47	chr21:17143600-17153000	Weak transcription	Primary B cells from peripheral blood	blood
48	chr21:17144000-17148800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
49	chr21:17144000-17153200	Weak transcription	Ovary	ovary
50	chr21:17144000-17153400	Weak transcription	Lung	lung

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