Variant report

Variant	rs1727709
Chromosome Location	chr3:145275967-145275968
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1629231	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1719705	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1731388	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1731391	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1731398	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs1731412	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2687754	0.83[AMR][1000 genomes]
rs2687757	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2695767	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2695770	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2699922	0.85[AMR][1000 genomes]
rs493168	0.89[AFR][1000 genomes]
rs522711	1.00[AFR][1000 genomes]
rs56663890	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62271800	1.00[AFR][1000 genomes]
rs624355	1.00[AFR][1000 genomes]
rs640477	1.00[AFR][1000 genomes]
rs6768969	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9878485	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877584	chr3:144903957-145833232	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv877587	chr3:144949453-145355433	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv1839695	chr3:145225110-145324049	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:145274200-145276000	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr3:145274200-145276000	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr3:145274400-145276000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr3:145274600-145276000	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr3:145274600-145276000	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr3:145274600-145278200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr3:145274800-145276000	Enhancers	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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