Variant report

Variant	rs17280627
Chromosome Location	chr3:80973341-80973342
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs12485625	0.90[ASN][1000 genomes]
rs13318177	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13324031	0.82[AFR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1347795	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1438566	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1438568	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1520589	0.82[AFR][1000 genomes]
rs1520590	0.82[AFR][1000 genomes]
rs2139685	0.82[AFR][1000 genomes]
rs2250739	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2578302	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2578303	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2578304	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2578305	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2578312	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2639212	0.86[EUR][1000 genomes]
rs2639213	0.87[EUR][1000 genomes]
rs2639219	0.87[EUR][1000 genomes]
rs2639221	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2639238	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2639244	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2639254	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2639255	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2639259	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2639261	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28490262	0.82[AFR][1000 genomes]
rs28717382	0.90[ASN][1000 genomes]
rs28885819	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62258009	0.82[AFR][1000 genomes]
rs62258010	0.82[AFR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62259248	0.94[ASN][1000 genomes]
rs7633748	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7639808	0.90[ASN][1000 genomes]
rs7643304	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9818650	0.82[AFR][1000 genomes]
rs9832758	0.82[AFR][1000 genomes]
rs9881573	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004115	chr3:80349665-81043308	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv536601	chr3:80349665-81043308	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv1067580	chr3:80416729-81043307	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv492220	chr3:80416729-81043307	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv1000592	chr3:80422155-81044175	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv527598	chr3:80585455-81250663	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
7	nsv877038	chr3:80781726-80984958	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv877039	chr3:80819678-81062618	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
9	nsv1009689	chr3:80856608-81141322	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv536602	chr3:80856608-81141322	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:80971400-80974400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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