Variant report

Variant	rs17281203
Chromosome Location	chr2:127072572-127072573
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr2:127071725-127072670	K562	blood:	n/a	n/a

Variant related genes	Relation type
ENSG00000236655	TF binding region

Extended variants
information (count: 101 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:88)

rs_ID	r²[population]
rs11674115	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11674405	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11675808	0.84[AMR][1000 genomes]
rs11682924	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11684235	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11684984	1.00[AFR][1000 genomes]
rs11687739	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11688466	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11688974	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11690602	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11691311	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11691316	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11693558	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11694971	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11695746	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12990559	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12996594	1.00[AFR][1000 genomes]
rs12999041	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12999792	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13001087	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13001322	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13008004	1.00[AFR][1000 genomes]
rs13008414	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13010045	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13020607	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13020846	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13027486	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13034164	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13034200	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13034238	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs243417	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34062495	0.84[AMR][1000 genomes]
rs34087027	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34228135	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34731630	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34737330	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34875932	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34939949	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34961369	0.86[AMR][1000 genomes]
rs34971908	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34981967	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35338260	1.00[AFR][1000 genomes]
rs35432246	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35486466	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35506144	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35876832	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs359688	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs359703	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs359704	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs359705	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs359706	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs359708	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs360290	0.86[EUR][1000 genomes]
rs360291	0.86[EUR][1000 genomes]
rs360292	0.86[EUR][1000 genomes]
rs360293	0.86[EUR][1000 genomes]
rs360295	0.86[EUR][1000 genomes]
rs360296	0.86[EUR][1000 genomes]
rs360297	0.86[EUR][1000 genomes]
rs360298	0.86[EUR][1000 genomes]
rs360299	0.86[EUR][1000 genomes]
rs360300	0.86[EUR][1000 genomes]
rs360301	0.86[EUR][1000 genomes]
rs360302	0.86[EUR][1000 genomes]
rs360303	0.86[EUR][1000 genomes]
rs360304	0.86[EUR][1000 genomes]
rs360305	0.86[EUR][1000 genomes]
rs360306	0.84[EUR][1000 genomes]
rs360307	0.86[EUR][1000 genomes]
rs360308	0.86[EUR][1000 genomes]
rs360309	0.86[EUR][1000 genomes]
rs360310	0.86[EUR][1000 genomes]
rs360312	0.86[EUR][1000 genomes]
rs360313	0.86[EUR][1000 genomes]
rs360316	0.85[EUR][1000 genomes]
rs360317	0.85[EUR][1000 genomes]
rs360318	0.85[EUR][1000 genomes]
rs360319	0.84[EUR][1000 genomes]
rs36061035	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs66530889	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs66701958	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs66815786	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs66993274	1.00[AFR][1000 genomes]
rs67155347	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs67271291	0.83[AFR][1000 genomes]
rs71413444	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72831489	1.00[AFR][1000 genomes]
rs72841597	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013181	chr2:126451639-127246965	Weak transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv997962	chr2:126464195-127234384	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1001995	chr2:126506739-127314488	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv534297	chr2:126506966-127245682	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv1013215	chr2:126857279-127127152	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv535918	chr2:126857279-127127152	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv874998	chr2:126917647-127175585	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv583010	chr2:126962441-127079722	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv1002265	chr2:127029745-127733458	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
10	nsv535919	chr2:127029745-127733458	Strong transcription Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
11	esv2757831	chr2:127033017-127161094	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	esv2759089	chr2:127033017-127161094	Weak transcription Bivalent Enhancer Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	nsv874999	chr2:127068140-127218915	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:127072200-127072800	Active TSS	Skeletal Muscle Female	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links